Murzyn K, Róg T, Jezierski G, Takaoka Y, Pasenkiewicz-Gierula M
Department of Biophysics, Institute of Molecular Biology, Jagiellonian University, Kraków 31-120, Poland.
Biophys J. 2001 Jul;81(1):170-83. doi: 10.1016/S0006-3495(01)75689-5.
Molecular dynamics (MD) simulations of fully hydrated bilayers in the liquid-crystalline state made of 1-palmitoyl-2-oleoyl-phosphatidylcholine (POPC) or 1-palmitoyl-2-elaidoyl-phosphatidylcholine (PEPC) were carried out to investigate the effect of the incorporation of a double bond in the phosphatidylcholine (PC) beta-chain (cis or trans) on the membrane/water interface. The bilayers reached thermal equilibrium after 3 and 1 ns of MD simulations, respectively, and productive runs were carried out for 3 ns for each bilayer. As reference systems, the 1,2-dimyristoyl-phosphatidylcholine (DMPC) bilayer (M. Pasenkiewicz-Gierula, Y. Takaoka, H. Miyagawa, K. Kitamura, and A. Kusumi, 1999, Biophys. J. 76:1228-1240) and DMPC-cholesterol (Chol) bilayer containing 22 mol % Chol (M. Pasenkiewicz-Gierula, T. Róg, K. Kitamura, A. and Kusumi, 2000, Biophys. J. 78:1376-1389) were used. The study shows that at the interface of POPC, PEPC, and DMPC-Chol bilayers, average numbers of PC-water and PC-PC interactions are similar and, respectively, greater and smaller than in the DMPC bilayer. The average area/PC in mono-unsaturated bilayers is approximately 4 A(2) larger than in the DMPC bilayer; nevertheless, a strong correlation was found between a single molecular area (SMA) of a PC and the number of interactions this PC makes; i.e., PCs (either saturated or unsaturated) with the same SMA form similar numbers of intermolecular links. The numbers and corresponding SMAs are distributed about averages pertinent to each bilayer. No significant difference between cis and trans bonds was found.
开展了由1-棕榈酰-2-油酰基磷脂酰胆碱(POPC)或1-棕榈酰-2-反油酰基磷脂酰胆碱(PEPC)构成的处于液晶态的完全水合双层膜的分子动力学(MD)模拟,以研究磷脂酰胆碱(PC)β链中双键(顺式或反式)的引入对膜/水界面的影响。双层膜分别在MD模拟3纳秒和1纳秒后达到热平衡,对每个双层膜进行了3纳秒的有效模拟运行。作为参考体系,使用了1,2-二肉豆蔻酰基磷脂酰胆碱(DMPC)双层膜(M. 帕森凯维奇-吉鲁拉、Y. 高冈、H. 宫川、K. 北村和A. 楠见,1999年,《生物物理杂志》76:1228 - 1240)以及含有22摩尔%胆固醇(Chol)的DMPC - 胆固醇(Chol)双层膜(M. 帕森凯维奇-吉鲁拉、T. 罗格、K. 北村、A. 和楠见,2000年,《生物物理杂志》78:1376 - 1389)。研究表明,在POPC、PEPC和DMPC - Chol双层膜的界面处,PC - 水和PC - PC相互作用的平均数量相似,且分别比DMPC双层膜中的更大和更小。单不饱和双层膜中每个PC的平均面积比DMPC双层膜大约大4 Ų;然而,发现PC的单分子面积(SMA)与其形成的相互作用数量之间存在很强的相关性;即,具有相同SMA的PC(无论是饱和的还是不饱和的)形成相似数量的分子间连接。数量和相应的SMA围绕每个双层膜的平均值分布。顺式和反式键之间未发现显著差异。