Jaeger Johannes, Goodwin Brian C
Department of Molecular Genetics and Microbiology, State University of New York at Stony Brook, 11794-5222, USA.
In Silico Biol. 2002;2(2):111-23.
Kinetic modeling of developmental dynamics requires detailed knowledge about genetic and metabolic networks that underlie developmental processes. However, such knowledge is not available for a vast majority of developmental processes. Here, we present an coarse-grained, phenomenological model of periodic pattern formation in multicellular organisms based on cellular oscillators (CO) that can be applied to systems for which little or no molecular data is available. An oscillatory process within cells serves as a developmental clock whose period is tightly regulated by cell-autonomous and non-autonomous mechanisms. A spatial pattern is generated as a result of an initial temporal ordering of the cell oscillators freezing into spatial order as the clocks slow down and stop at different times or phases in their cycles. When applied to vertebrate somitogenesis, the CO model can reproduce the dynamics of periodic gene expression patterns observed in the presomitic mesoderm. Different somite lengths can be generated by altering the period of the oscillation. There is evidence that a CO-type mechanism might also underlie segment formation in certain invertebrates, such as annelids and short germ insects. This suggests that the dynamical principles of sequential segmentation might be equivalent throughout the animal kingdom although most of the genes involved in segment determination differ between distant phyla.
发育动力学的动力学建模需要关于发育过程背后的遗传和代谢网络的详细知识。然而,对于绝大多数发育过程来说,此类知识并不存在。在此,我们基于细胞振荡器(CO)提出了一种多细胞生物中周期性模式形成的粗粒度现象学模型,该模型可应用于几乎没有或完全没有分子数据的系统。细胞内的振荡过程充当发育时钟,其周期由细胞自主和非自主机制严格调控。由于细胞振荡器的初始时间排序,随着时钟在其周期的不同时间或阶段减慢并停止,这种排序冻结为空间顺序,从而产生空间模式。当应用于脊椎动物体节发生时,CO模型可以重现在前体节中胚层观察到的周期性基因表达模式的动态变化。通过改变振荡周期可以产生不同的体节长度。有证据表明,CO型机制可能也是某些无脊椎动物(如环节动物和短胚昆虫)节段形成的基础。这表明,尽管参与节段确定的大多数基因在远缘门之间存在差异,但顺序分割的动力学原理在整个动物界可能是相同的。