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蛋白质溶液的高分辨率广角X射线散射:束流剂量对蛋白质完整性的影响。

High-resolution wide-angle X-ray scattering of protein solutions: effect of beam dose on protein integrity.

作者信息

Fischetti Robert F, Rodi Diane J, Mirza Ahmed, Irving Thomas C, Kondrashkina Elena, Makowski Lee

机构信息

GM/CA-CAT, Advanced Photon Source, Argonne National Laboratory, Argonne, IL 60439, USA.

出版信息

J Synchrotron Radiat. 2003 Sep 1;10(Pt 5):398-404. doi: 10.1107/s0909049503016583. Epub 2003 Aug 28.

Abstract

Wide-angle X-ray scattering patterns from proteins in solution contain information relevant to the determination of protein fold. At relevant scattering angles, however, these data are weak, and the degree to which they might be used to categorize the fold of a protein is unknown. Preliminary work has been performed at the BioCAT insertion-device beamline at the Advanced Photon Source which demonstrates that one can collect X-ray scattering data from proteins in solution to spacings of at least 2.2 A (q = 2.8 A(-1)). These data are sensitive to protein conformational states, and are in good agreement with the scattering predicted by the program CRYSOL using the known three-dimensional atomic coordinates of the protein. An important issue in the exploitation of this technique as a tool for structural genomics is the extent to which the high intensity of X-rays available at third-generation synchrotron sources chemically or structurally damage proteins. Various data-collection protocols have been investigated demonstrating conditions under which structural degradation of even sensitive proteins can be minimized, making this technique a viable tool for protein fold categorization, the study of protein folding, unfolding, protein-ligand interactions and domain movement.

摘要

溶液中蛋白质的广角X射线散射图谱包含与蛋白质折叠测定相关的信息。然而,在相关散射角度下,这些数据很微弱,并且它们可用于对蛋白质折叠进行分类的程度尚不清楚。在先进光子源的BioCAT插入式装置光束线上进行了初步工作,结果表明人们可以从溶液中的蛋白质收集X射线散射数据,分辨率至少可达2.2 Å(q = 2.8 Å⁻¹)。这些数据对蛋白质构象状态敏感,并且与使用蛋白质已知三维原子坐标的CRYSOL程序预测的散射结果高度吻合。将该技术用作结构基因组学工具时的一个重要问题是,第三代同步加速器源所提供的高强度X射线在多大程度上会对蛋白质造成化学或结构损伤。已经研究了各种数据收集方案,确定了能够将即使是敏感蛋白质的结构降解降至最低的条件,从而使该技术成为蛋白质折叠分类、蛋白质折叠与去折叠研究、蛋白质-配体相互作用以及结构域运动研究的可行工具。

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