Bortoluzzi S, Romualdi C, Bisognin A, Danieli G A
Department of Biology, University of Padua, Padua I-35131, Italy.
Physiol Genomics. 2003 Nov 11;15(3):223-7. doi: 10.1152/physiolgenomics.00095.2003.
By a computational approach we reconstructed genomic transcriptional profiles of 19 different adult human tissues, based on information on activity of 27,924 genes obtained from unbiased UniGene cDNA libraries. In each considered tissue, a small number of genes resulted highly expressed or "tissue specific." Distribution of gene expression levels in a tissue appears to follow a power law, thus suggesting a correspondence between transcriptional profile and "scale-free" topology of protein networks. The expression of 737 genes involved in Mendelian diseases was analyzed, compared with a large reference set of known human genes. Disease genes resulted significantly more expressed than expected. The possible correspondence of their products to important nodes of intracellular protein network is suggested. Auto-organization of the protein network, its stability in time in the differentiated state, and relationships with the degree of genetic variability at genome level are discussed.
通过一种计算方法,我们基于从无偏向性的UniGene cDNA文库获得的27924个基因的活性信息,重建了19种不同成人人类组织的基因组转录谱。在每种所考虑的组织中,少数基因呈现高表达或“组织特异性”。组织中基因表达水平的分布似乎遵循幂律,因此表明转录谱与蛋白质网络的“无标度”拓扑结构之间存在对应关系。分析了737个与孟德尔疾病相关的基因的表达,并与大量已知人类基因的参考集进行了比较。疾病基因的表达明显高于预期。提示了它们的产物与细胞内蛋白质网络重要节点的可能对应关系。讨论了蛋白质网络的自组织、其在分化状态下随时间的稳定性以及与基因组水平遗传变异程度的关系。