Suppr超能文献

关于多价效应的本质:一个热力学模型

On the nature of the multivalency effect: a thermodynamic model.

作者信息

Kitov Pavel I, Bundle David R

机构信息

Chemistry Department, University of Alberta, Edmonton, Canada T6G 2G2.

出版信息

J Am Chem Soc. 2003 Dec 31;125(52):16271-84. doi: 10.1021/ja038223n.

Abstract

A quantitative model is proposed for the analysis of the thermodynamic parameters of multivalent interactions in dilute solutions or with immobilized multimeric receptor. The model takes into account all bound species and describes multivalent binding via two microscopic binding energies corresponding to inter- and intramolecular interactions (Delta G(o)inter and Delta G(o)intra), the relative contributions of which depend on the distribution of complexes with different numbers of occupied binding sites. The third component of the overall free energy, which we call the "avidity entropy" term, is a function of the degeneracy of bound states, Omega(i), which is calculated on the basis of the topology of interaction and the distribution of all bound species. This term grows rapidly with the number of receptor sites and ligand multivalency, it always favors binding, and explains why multivalency can overcome the loss of conformational entropy when ligands displayed at the ends of long tethers are bound. The microscopic parameters and may be determined from the observed binding energies for a set of oligovalent ligands by nonlinear fitting with the theoretical model. Here binding data obtained from two series of oligovalent carbohydrate inhibitors for Shiga-like toxins were used to verify the theory. The decavalent and octavalent inhibitors exhibit subnanomolar activity and are the most active soluble inhibitors yet seen that block Shiga-like toxin binding to its native receptor. The theory developed here in conjunction with our protocol for the optimization of tether length provides a predictive approach to design and maximize the avidity of multivalent ligands.

摘要

提出了一种定量模型,用于分析稀溶液中或与固定化多聚体受体的多价相互作用的热力学参数。该模型考虑了所有结合物种,并通过对应于分子间和分子内相互作用的两个微观结合能(ΔG(o)inter和ΔG(o)intra)来描述多价结合,其相对贡献取决于具有不同占据结合位点数的复合物的分布。总自由能的第三个组成部分,我们称之为“亲和力熵”项,是结合态简并度Ω(i)的函数,它是根据相互作用的拓扑结构和所有结合物种的分布计算得出的。该项随受体位点数量和配体多价性的增加而迅速增长,它总是有利于结合,并解释了为什么当连接在长链末端的配体结合时,多价性可以克服构象熵的损失。微观参数可以通过用理论模型进行非线性拟合,从一组寡价配体的观察结合能中确定。这里使用从两组针对志贺样毒素的寡价碳水化合物抑制剂获得的结合数据来验证该理论。十价和八价抑制剂表现出亚纳摩尔活性,是目前所见到的阻断志贺样毒素与其天然受体结合的最具活性的可溶性抑制剂。这里开发的理论与我们优化连接链长度的方案相结合,为设计和最大化多价配体的亲和力提供了一种预测方法。

文献AI研究员

20分钟写一篇综述,助力文献阅读效率提升50倍。

立即体验

用中文搜PubMed

大模型驱动的PubMed中文搜索引擎

马上搜索

文档翻译

学术文献翻译模型,支持多种主流文档格式。

立即体验