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利用固态核磁共振确定膜蛋白结构

Membrane protein structure determination using solid-state NMR.

作者信息

Watts Anthony, Straus Suzana K, Grage Stephan L, Kamihira Miya, Lam Yuen Han, Zhao Xin

机构信息

Biomembrane Structure Unit, Department of Biochemistry, University of Oxford, UK.

出版信息

Methods Mol Biol. 2004;278:403-73. doi: 10.1385/1-59259-809-9:403.

Abstract

Solid-state NMR is emerging as a method for resolving structural information for large biomolecular complexes, such as membrane-embedded proteins. In principle, there is no molecular weight limit to the use of the approach, although the complexity and volume of data is still outside complete assignment and structural determinations for any large (Mr > approx 30,000) complex unless specific methods to reduce the information content to a manageable amount are employed. Such methods include specific residue-type labeling, labeling of putative segments of a protein, or examination of complexes made up of smaller, manageable units, such as oligomeric ion channels. Labeling possibilities are usually limited to recombinant or synthesized proteins, and labeling strategies often follow models from a bioinformatics approach. In all cases, and in common with most membrane studies, sample preparation is vital, and this activity alone can take considerable effort before NMR can be applied--peptide or protein production (synthesis or expression) followed by reconstitution into bilayers and resolution of suitable sample geometry is still technically challenging. As experience is gained in the field, this development time should decrease. Here, the practical aspects of the use of solid-state NMR for membrane protein structural determinations are presented, as well as how the methodology can be applied. Some successes to date are discussed, with an indication of how the area might develop.

摘要

固态核磁共振正逐渐成为一种解析大型生物分子复合物(如膜嵌入蛋白)结构信息的方法。原则上,该方法的使用没有分子量限制,不过,除非采用特定方法将信息量减少到可管理的程度,否则对于任何大型(分子量约大于30,000)复合物而言,数据的复杂性和体量仍超出了完全归属和结构测定的范围。此类方法包括特定残基类型标记、蛋白质假定片段的标记,或由较小的、易于处理的单元(如寡聚离子通道)组成的复合物的研究。标记的可能性通常限于重组或合成蛋白,且标记策略往往遵循生物信息学方法的模型。在所有情况下,与大多数膜研究一样,样品制备至关重要,而且在应用核磁共振之前,仅这一步活动就可能需要付出相当大的努力——肽或蛋白质的制备(合成或表达),随后重构到双层膜中并确定合适的样品几何形状在技术上仍然具有挑战性。随着该领域经验的积累,这种开发时间应该会减少。本文介绍了使用固态核磁共振进行膜蛋白结构测定的实际操作方面,以及该方法如何应用。讨论了迄今为止取得 的一些成功,并指出了该领域可能的发展方向。

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