组成异质性对系统发育估计的偏倚效应可能被低估。 - Suppr

Suppr

超能文献

The biasing effect of compositional heterogeneity on phylogenetic estimates may be underestimated.

作者信息

Jermiin Lars, Ho Simon Y, Ababneh Faisal, Robinson John, Larkum Anthony W

机构信息

School of Biological Sciences, University of Sydney, NSW 2006, Australia.

出版信息

Syst Biol. 2004 Aug;53(4):638-43. doi: 10.1080/10635150490468648.

DOI:10.1080/10635150490468648

PMID:15371251

Abstract

摘要

相似文献

The biasing effect of compositional heterogeneity on phylogenetic estimates may be underestimated.

Syst Biol. 2004 Aug;53(4):638-43. doi: 10.1080/10635150490468648.

Joint Bayesian estimation of alignment and phylogeny.

Syst Biol. 2005 Jun;54(3):401-18. doi: 10.1080/10635150590947041.

Bayesian phylogeny analysis via stochastic approximation Monte Carlo.

Mol Phylogenet Evol. 2009 Nov;53(2):394-403. doi: 10.1016/j.ympev.2009.06.019. Epub 2009 Jul 7.

Homology assessment and molecular sequence alignment.

J Biomed Inform. 2006 Feb;39(1):18-33. doi: 10.1016/j.jbi.2005.11.005. Epub 2005 Dec 9.

Phylogenetic tree construction using sequential stochastic approximation Monte Carlo.

Biosystems. 2008 Jan;91(1):94-107. doi: 10.1016/j.biosystems.2007.08.003. Epub 2007 Aug 19.

Representation in stochastic search for phylogenetic tree reconstruction.

J Biomed Inform. 2006 Feb;39(1):43-50. doi: 10.1016/j.jbi.2005.11.001. Epub 2005 Nov 28.

PSeq-Gen: an application for the Monte Carlo simulation of protein sequence evolution along phylogenetic trees.

Comput Appl Biosci. 1997 Oct;13(5):559-60. doi: 10.1093/bioinformatics/13.5.559.

The complete mitochondrial genomes of two common shrimps (Litopenaeus vannamei and Fenneropenaeus chinensis) and their phylogenomic considerations.

Gene. 2007 Nov 15;403(1-2):98-109. doi: 10.1016/j.gene.2007.06.021. Epub 2007 Jul 14.

On the quality of tree-based protein classification.

Bioinformatics. 2005 May 1;21(9):1876-90. doi: 10.1093/bioinformatics/bti244. Epub 2005 Jan 12.

Gelechioidea (Insecta: Lepidoptera) systematics: a reexamination using combined morphology and mitochondrial DNA data.

Mol Phylogenet Evol. 2005 May;35(2):380-94. doi: 10.1016/j.ympev.2005.02.003.

引用本文的文献

A quartet-based approach for inferring phylogenetically informative features from genomic and phenomic data.

Comput Struct Biotechnol J. 2025 Aug 22;27:3710-3718. doi: 10.1016/j.csbj.2025.08.015. eCollection 2025.

High-level phylogenetic relationships within revisited.

IMA Fungus. 2025 Jun 20;16:e153279. doi: 10.3897/imafungus.16.153279. eCollection 2025.

Unraveling myriapod evolution: sealion, a novel quartet-based approach for evaluating phylogenetic uncertainty.

NAR Genom Bioinform. 2025 Mar 7;7(1):lqaf018. doi: 10.1093/nargab/lqaf018. eCollection 2025 Mar.

Evolutionary Relationships of Omani , .

Insects. 2024 Aug 29;15(9):648. doi: 10.3390/insects15090648.

Revisiting the four Hexapoda classes: Protura as the sister group to all other hexapods.

Proc Natl Acad Sci U S A. 2024 Sep 24;121(39):e2408775121. doi: 10.1073/pnas.2408775121. Epub 2024 Sep 19.

Ant backbone phylogeny resolved by modelling compositional heterogeneity among sites in genomic data.

Commun Biol. 2024 Jan 17;7(1):106. doi: 10.1038/s42003-024-05793-7.

Evolutionary Insights into the Relationship of Frogs, Salamanders, and Caecilians and Their Adaptive Traits, with an Emphasis on Salamander Regeneration and Longevity.

Animals (Basel). 2023 Nov 8;13(22):3449. doi: 10.3390/ani13223449.

Phylogenetic Relationships of the Mutualistic Fungi Associated with in Oman.

Mycobiology. 2023 Oct 12;51(5):281-287. doi: 10.1080/12298093.2023.2258623. eCollection 2023.

DNA Sequences Are as Useful as Protein Sequences for Inferring Deep Phylogenies.

Syst Biol. 2023 Nov 1;72(5):1119-1135. doi: 10.1093/sysbio/syad036.

Mitochondrial genome comparison reveals the evolution of cnidarians.

Ecol Evol. 2023 Jun 13;13(6):e10157. doi: 10.1002/ece3.10157. eCollection 2023 Jun.

文献AI研究员

20分钟写一篇综述，助力文献阅读效率提升50倍。

立即体验

用中文搜PubMed

大模型驱动的PubMed中文搜索引擎

马上搜索

文档翻译

学术文献翻译模型，支持多种主流文档格式。

立即体验

相似文献

The biasing effect of compositional heterogeneity on phylogenetic estimates may be underestimated.

Syst Biol. 2004 Aug;53(4):638-43. doi: 10.1080/10635150490468648.

Joint Bayesian estimation of alignment and phylogeny.

Syst Biol. 2005 Jun;54(3):401-18. doi: 10.1080/10635150590947041.

Bayesian phylogeny analysis via stochastic approximation Monte Carlo.

Mol Phylogenet Evol. 2009 Nov;53(2):394-403. doi: 10.1016/j.ympev.2009.06.019. Epub 2009 Jul 7.

Homology assessment and molecular sequence alignment.

J Biomed Inform. 2006 Feb;39(1):18-33. doi: 10.1016/j.jbi.2005.11.005. Epub 2005 Dec 9.

Phylogenetic tree construction using sequential stochastic approximation Monte Carlo.

Biosystems. 2008 Jan;91(1):94-107. doi: 10.1016/j.biosystems.2007.08.003. Epub 2007 Aug 19.

Representation in stochastic search for phylogenetic tree reconstruction.

J Biomed Inform. 2006 Feb;39(1):43-50. doi: 10.1016/j.jbi.2005.11.001. Epub 2005 Nov 28.

PSeq-Gen: an application for the Monte Carlo simulation of protein sequence evolution along phylogenetic trees.

Comput Appl Biosci. 1997 Oct;13(5):559-60. doi: 10.1093/bioinformatics/13.5.559.

The complete mitochondrial genomes of two common shrimps (Litopenaeus vannamei and Fenneropenaeus chinensis) and their phylogenomic considerations.

Gene. 2007 Nov 15;403(1-2):98-109. doi: 10.1016/j.gene.2007.06.021. Epub 2007 Jul 14.

On the quality of tree-based protein classification.

Bioinformatics. 2005 May 1;21(9):1876-90. doi: 10.1093/bioinformatics/bti244. Epub 2005 Jan 12.

Gelechioidea (Insecta: Lepidoptera) systematics: a reexamination using combined morphology and mitochondrial DNA data.

Mol Phylogenet Evol. 2005 May;35(2):380-94. doi: 10.1016/j.ympev.2005.02.003.

引用本文的文献

A quartet-based approach for inferring phylogenetically informative features from genomic and phenomic data.

Comput Struct Biotechnol J. 2025 Aug 22;27:3710-3718. doi: 10.1016/j.csbj.2025.08.015. eCollection 2025.

High-level phylogenetic relationships within revisited.

IMA Fungus. 2025 Jun 20;16:e153279. doi: 10.3897/imafungus.16.153279. eCollection 2025.

Unraveling myriapod evolution: sealion, a novel quartet-based approach for evaluating phylogenetic uncertainty.

NAR Genom Bioinform. 2025 Mar 7;7(1):lqaf018. doi: 10.1093/nargab/lqaf018. eCollection 2025 Mar.

Evolutionary Relationships of Omani , .

Insects. 2024 Aug 29;15(9):648. doi: 10.3390/insects15090648.

Revisiting the four Hexapoda classes: Protura as the sister group to all other hexapods.

Proc Natl Acad Sci U S A. 2024 Sep 24;121(39):e2408775121. doi: 10.1073/pnas.2408775121. Epub 2024 Sep 19.

Ant backbone phylogeny resolved by modelling compositional heterogeneity among sites in genomic data.

Commun Biol. 2024 Jan 17;7(1):106. doi: 10.1038/s42003-024-05793-7.

Evolutionary Insights into the Relationship of Frogs, Salamanders, and Caecilians and Their Adaptive Traits, with an Emphasis on Salamander Regeneration and Longevity.

Animals (Basel). 2023 Nov 8;13(22):3449. doi: 10.3390/ani13223449.

Phylogenetic Relationships of the Mutualistic Fungi Associated with in Oman.

Mycobiology. 2023 Oct 12;51(5):281-287. doi: 10.1080/12298093.2023.2258623. eCollection 2023.

DNA Sequences Are as Useful as Protein Sequences for Inferring Deep Phylogenies.

Syst Biol. 2023 Nov 1;72(5):1119-1135. doi: 10.1093/sysbio/syad036.

Mitochondrial genome comparison reveals the evolution of cnidarians.

Ecol Evol. 2023 Jun 13;13(6):e10157. doi: 10.1002/ece3.10157. eCollection 2023 Jun.