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通过多种方法相结合对蛋白激酶催化结构域进行核磁共振主链归属:应用于环磷酸腺苷依赖性蛋白激酶的催化亚基

NMR backbone assignment of a protein kinase catalytic domain by a combination of several approaches: application to the catalytic subunit of cAMP-dependent protein kinase.

作者信息

Langer Thomas, Vogtherr Martin, Elshorst Bettina, Betz Marco, Schieborr Ulrich, Saxena Krishna, Schwalbe Harald

机构信息

Johann Wolfgang Goethe-Universität Frankfurt, Institute for Organic Chemistry and Chemical Biology, Center for Biomolecular Magnetic Resonance, Marie Curie Strasse 11, 60439 Frankfurt am Main, Germany.

出版信息

Chembiochem. 2004 Nov 5;5(11):1508-16. doi: 10.1002/cbic.200400129.

Abstract

Protein phosphorylation is one of the most important mechanisms used for intracellular regulation in eukaryotic cells. Currently, one of the best-characterized protein kinases is the catalytic subunit of cAMP-dependent protein kinase or protein kinase A (PKA). PKA has the typical bilobular structure of kinases, with the active site consisting of a cleft between the two structural lobes. For full kinase activity, the catalytic subunit has to be phosphorylated. The catalytic subunit of PKA has two main phosphorylation sites: Thr197 and Ser338. Binding of ATP or inhibitors to the ATP site induces large structural changes. Here we describe the partial backbone assignment of the PKA catalytic domain by NMR spectroscopy, which represents the first NMR assignment of any protein kinase catalytic domain. Backbone resonance assignment for the 42 kDa protein was accomplished by an approach employing 1) triply ((2)H,(13)C,(15)N) labeled protein and classical NMR assignment experiments, 2) back-calculation of chemical shifts from known X-ray structures, 3) use of paramagnetic adenosine derivatives as spin-labels, and 4) selective amino acid labeling. Interpretation of chemical-shift perturbations allowed mapping of the interaction surface with the protein kinase inhibitor H7. Furthermore, structural conformational changes were observed by comparison of backbone amide shifts obtained by 2D (1)H,(15)N TROSY of an inactive Thr197Ala mutant with the wild-type enzyme.

摘要

蛋白质磷酸化是真核细胞内用于调节的最重要机制之一。目前,特征最明确的蛋白激酶之一是环磷酸腺苷依赖性蛋白激酶或蛋白激酶A(PKA)的催化亚基。PKA具有典型的激酶双叶结构,活性位点由两个结构叶之间的裂隙组成。为了实现完全的激酶活性,催化亚基必须被磷酸化。PKA的催化亚基有两个主要的磷酸化位点:苏氨酸197和丝氨酸338。ATP或抑制剂与ATP位点的结合会诱导较大的结构变化。在此,我们通过核磁共振光谱描述了PKA催化结构域的部分主链归属,这代表了任何蛋白激酶催化结构域的首次核磁共振归属。通过以下方法完成了对42 kDa蛋白的主链共振归属:1)使用三重((2)H、(13)C、(15)N)标记的蛋白和经典的核磁共振归属实验;2)根据已知的X射线结构进行化学位移的反向计算;3)使用顺磁性腺苷衍生物作为自旋标记;4)选择性氨基酸标记。化学位移扰动的解释使得能够绘制与蛋白激酶抑制剂H7的相互作用表面。此外,通过比较无活性的苏氨酸197丙氨酸突变体与野生型酶的二维(1)H、(15)N TROSY获得的主链酰胺位移,观察到了结构构象变化。

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