Pal Rinku, Bhasin V K, Lal Rup
Molecular Biology Laboratory, Department of Zoology, University of Delhi, Delhi - 110007, India.
Int J Syst Evol Microbiol. 2006 Mar;56(Pt 3):667-670. doi: 10.1099/ijs.0.64161-0.
The sphingomonad group contains bacterial isolates that are quite diverse in terms of their phylogenetic, ecological and physiological properties. Thus, the genus Sphingomonas was divided into four distinct genera, Sphingomonas sensu stricto, Sphingobium, Novosphingobium and Sphingopyxis on the basis of 16S rRNA gene sequence phylogenetic analysis, signature nucleotides, fatty acid profiles and polyamine patterns and this classification is currently widely accepted. In this study, a complete analysis of the 16S rRNA gene sequences of all the members of the group of sphingomonads encompassed in the genera Sphingomonas sensu stricto, Sphingobium, Novosphingobium and Sphingopyxis was inferred by using tree-making algorithms. [Sphingomonas] xenophaga DSM 6383T was found to form a distinct clade with the members of the genus Sphingobium, whereas [Sphingomonas] taejonensis DSM 15583T forms a clade with the members of the genus Sphingopyxis. The respective positions of these strains were also supported by the data for signature nucleotides, 2-hydroxy fatty acid profiles, polyamine patterns and the nitrate reduction properties of the strains. We therefore propose the reclassification of [Sphingomonas] xenophaga and [Sphingomonas] taejonensis as Sphingobium xenophagum comb. nov. (type strain DSM 6383T = CIP 107206T) and Sphingopyxis taejonensis comb. nov. (type strain DSM 15583T = KCTC 2884T = KCCM 41068T), respectively.
鞘氨醇单胞菌属包含一些细菌分离株,它们在系统发育、生态和生理特性方面差异很大。因此,基于16S rRNA基因序列系统发育分析、特征核苷酸、脂肪酸谱和多胺模式,鞘氨醇单胞菌属被分为四个不同的属,即狭义鞘氨醇单胞菌属、鞘氨醇杆菌属、新鞘氨醇杆菌属和鞘氨醇球菌属,这种分类目前已被广泛接受。在本研究中,通过使用建树算法推断了狭义鞘氨醇单胞菌属、鞘氨醇杆菌属、新鞘氨醇杆菌属和鞘氨醇球菌属中所有鞘氨醇单胞菌群成员的16S rRNA基因序列的完整分析。嗜异鞘氨醇单胞菌([Sphingomonas] xenophaga)DSM 6383T被发现与鞘氨醇杆菌属的成员形成一个独特的进化枝,而大田鞘氨醇单胞菌([Sphingomonas] taejonensis)DSM 15583T与鞘氨醇球菌属的成员形成一个进化枝。这些菌株的各自位置也得到了特征核苷酸数据、2-羟基脂肪酸谱、多胺模式以及菌株的硝酸盐还原特性的支持。因此,我们提议将嗜异鞘氨醇单胞菌和大田鞘氨醇单胞菌分别重新分类为嗜异鞘氨醇杆菌(Sphingobium xenophagum)新组合(模式菌株DSM 6383T = CIP 107206T)和大田鞘氨醇球菌(Sphingopyxis taejonensis)新组合(模式菌株DSM 15583T = KCTC 2884T = KCCM 41068T)。