Suppr超能文献

通过一个和两个OH*自由基以及H2O2分子与鸟嘌呤反应形成8-氧代鸟嘌呤的机制:量子计算研究

Mechanisms of formation of 8-oxoguanine due to reactions of one and two OH* radicals and the H2O2 molecule with guanine: A quantum computational study.

作者信息

Jena N R, Mishra P C

机构信息

Department of Physics, Banaras Hindu University, Varanasi-221005, India.

出版信息

J Phys Chem B. 2005 Jul 28;109(29):14205-18. doi: 10.1021/jp050646j.

Abstract

Mechanisms of formation of the mutagenic product 8-oxoguanine (8OG) due to reactions of guanine with two separate OH* radicals and with H2O2 were investigated at the B3LYP/6-31G, B3LYP/6-311++G, and B3LYP/AUG-cc-pVDZ levels of theory. Single point energy calculations were carried out with the MP2/AUG-cc-pVDZ method employing the optimized geometries at the B3LYP/AUG-cc-pVDZ level. Solvent effect was treated using the PCM and IEF-PCM models. Reactions of two separate OH* radicals and H2O2 with the C2 position of 5-methylimidazole (5MI) were investigated taking 5MI as a model to study reactions at the C8 position of guanine. The addition reaction of an OH* radical at the C8 position of guanine is found to be nearly barrierless while the corresponding adduct is quite stable. The reaction of a second OH* radical at the C8 position of guanine leading to the formation of 8OG complexed with a water molecule can take place according to two different mechanisms, involving two steps each. According to one mechanism, at the first step, 8-hydroxyguanine (8OHG) complexed with a water molecule is formed ,while at the second step, 8OHG is tautomerized to 8OG. In the other mechanism, at the first step, an intermediate complexed (IC) with a water molecule is formed, the five-membered ring of which is open, while at the second step, the five-membered ring is closed and a hydrogen bonded complex of 8OG with a water molecule is formed. The reaction of H2O2 with guanine leading to the formation of 8OG complexed with a water molecule can also take place in accordance with two different mechanisms having two steps each. At the first step of one mechanism, H2O2 is dissociated into two OH* groups that react with guanine to form the same IC as that formed in the reaction with two separate OH* radicals, and the subsequent step of this mechanism is also the same as that of the reaction of guanine with two separate OH* radicals. At the first step of the other mechanism of the reaction of guanine with H2O2, the latter molecule is dissociated into a hydrogen atom and an OOH* group which become bonded to the N7 and C8 atoms of guanine, respectively. At the second step of this mechanism, the OOH* group is dissociated into an oxygen atom and an OH* group, the former becomes bonded to the C8 atom of guanine while the latter abstracts the H8 atom bonded to C8, thus producing 8OG complexed with a water molecule. Solvent effects of the aqueous medium on certain reaction barriers and released energies are appreciable. 5MI works as a satisfactory model for a qualitative study of the reactions of two separate OH* radicals or H2O2 occurring at the C8 position of guanine.

摘要

在B3LYP/6 - 31G、B3LYP/6 - 311++G和B3LYP/AUG - cc - pVDZ理论水平下,研究了鸟嘌呤与两个独立的OH自由基以及与H2O2反应形成诱变产物8 - 氧代鸟嘌呤(8OG)的机制。采用MP2/AUG - cc - pVDZ方法,利用B3LYP/AUG - cc - pVDZ水平优化的几何结构进行单点能量计算。使用PCM和IEF - PCM模型处理溶剂效应。以5 - 甲基咪唑(5MI)为模型,研究两个独立的OH自由基和H2O2与5MI的C2位反应,以研究鸟嘌呤C8位的反应。发现OH自由基在鸟嘌呤C8位的加成反应几乎没有势垒,而相应的加合物相当稳定。鸟嘌呤C8位的第二个OH自由基反应生成与水分子络合的8OG可通过两种不同机制发生,每种机制都涉及两个步骤。根据一种机制,第一步形成与水分子络合的8 - 羟基鸟嘌呤(8OHG),第二步8OHG互变异构为8OG。在另一种机制中,第一步形成与水分子络合的中间体络合物(IC),其五元环打开,第二步五元环闭合,形成8OG与水分子的氢键络合物。H2O2与鸟嘌呤反应生成与水分子络合的8OG也可通过两种不同机制发生,每种机制都有两个步骤。在一种机制的第一步,H2O2分解为两个OH基团,它们与鸟嘌呤反应形成与两个独立OH自由基反应中形成的相同的IC,该机制的后续步骤也与鸟嘌呤与两个独立OH自由基的反应相同。在鸟嘌呤与H2O2反应的另一种机制的第一步,后者分子分解为一个氢原子和一个OOH基团,它们分别与鸟嘌呤的N7和C8原子结合。在该机制的第二步,OOH基团分解为一个氧原子和一个OH基团,前者与鸟嘌呤的C8原子结合,后者夺取与C8相连的H8原子,从而生成与水分子络合的8OG。水介质的溶剂效应对某些反应势垒和释放能量有显著影响。5MI作为鸟嘌呤C8位两个独立OH*自由基或H2O2反应定性研究的满意模型。

文献AI研究员

20分钟写一篇综述,助力文献阅读效率提升50倍。

立即体验

用中文搜PubMed

大模型驱动的PubMed中文搜索引擎

马上搜索

文档翻译

学术文献翻译模型,支持多种主流文档格式。

立即体验