Smarda Petr, Bures Petr
Masaryk University, Faculty of Science, Institute of Botany and Zoology, Kotlárská 2, CZ-611 37 Brno, Czech Republic.
Ann Bot. 2006 Sep;98(3):665-78. doi: 10.1093/aob/mcl150. Epub 2006 Jul 24.
Intraspecific genome size variability of Festuca pallens occurring on relict rocky steppes in Central Europe was studied on two ploidy levels and three geographical scales: (1) local scale of 24 populations, (2) landscape scale of three transects in river canyons or hill systems, and (3) global scale of 160 samples covering the whole distribution area.
DAPI flow cytometry of homogeneously cultivated samples (>or=1 year), measured randomly with two internal standards, Lycopersicon esculentum and Pisum sativum. Differences in DNA content were confirmed (1) by the double peaks of simultaneously measured samples, (2) based on measurements carried out in different seasons, and (3) by additional measurements with propidium iodide.
On a global scale, the relative DNA content ranged between 1.170-fold in diploids and 1.164-fold in tetraploids. A maximum difference of 1.088-fold between the mean relative DNA content of nearby populations was found. In 16 of 24 populations significant variability was shown (P<0.001, 1.121-fold as maximum). For both ploidy levels, the relative genome size had the same range and geographical pattern, correlated with geographical coordinates (P<0.01). Diploids with larger genomes occur on relict habitats (P<0.01), and in areas of periglacial steppes (20,000 years ago; P<0.02). In tetraploids, the relative DNA content differs among the three previously recognized geographical types (Alpine, Pannonian and Scabrifolia, P<0.001). Tetraploids have a relative DNA content smaller than twice that of the diploids (P<0.001). An influence of microhabitat on DNA content variation was not confirmed.
Genome size variability occurs over all spatial scales: intrapopulation, landscape and global. Correlation between geographical coordinates and palaeovegetation type, concomitant with diploids and tetraploids, and no influence of microhabitat were found. Genome size decreases in tetraploids. Lower CVs, and thus higher accuracy, resolution and reproducibility, favour DAPI measurements for the study of intraspecific genome size variability.
对中欧残存岩石草原上的苍白羊茅种内基因组大小变异性进行了研究,涉及两个倍性水平和三个地理尺度:(1)24个种群的局部尺度;(2)河流峡谷或山地系统中三条样带的景观尺度;(3)覆盖整个分布区的160个样本的全球尺度。
对均匀培养(≥1年)的样本进行DAPI流式细胞术分析,随机使用两种内标,即番茄和豌豆。DNA含量差异通过以下方式得到证实:(1)同时测量样本的双峰;(2)基于不同季节进行的测量;(3)用碘化丙啶进行额外测量。
在全球尺度上,二倍体的相对DNA含量范围为1.170倍,四倍体为1.164倍。在相邻种群的平均相对DNA含量之间发现最大差异为1.088倍。在24个种群中的16个种群中显示出显著变异性(P<0.001,最大为1.121倍)。对于两个倍性水平,相对基因组大小具有相同的范围和地理模式,与地理坐标相关(P<0.01)。具有较大基因组的二倍体出现在残存生境中(P<0.01),以及在冰缘草原地区(20000年前;P<0.02)。在四倍体中,相对DNA含量在先前确认的三种地理类型(高山型、潘诺尼亚型和糙叶型)之间存在差异(P<0.001)。四倍体的相对DNA含量小于二倍体的两倍(P<0.001)。未证实微生境对DNA含量变异有影响。
基因组大小变异性存在于所有空间尺度:种群内、景观和全球。发现地理坐标与古植被类型之间存在相关性,同时涉及二倍体和四倍体,且微生境没有影响。四倍体的基因组大小减小。较低的变异系数,从而更高的准确性、分辨率和可重复性,有利于使用DAPI测量来研究种内基因组大小变异性。