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广泛宿主范围单链RNA噬菌体PRR1的全基因组序列表明它属于细噬菌体属,具有与同属的噬菌体共同的特征。

Complete genome sequence of the broad host range single-stranded RNA phage PRR1 places it in the Levivirus genus with characteristics shared with Alloleviviruses.

作者信息

Ruokoranta Tanja M, Grahn A Marika, Ravantti Janne J, Poranen Minna M, Bamford Dennis H

机构信息

Department of Biological and Environmental Sciences, Institute of Biotechnology, Viikki Biocenter 2, P.O. Box 56 (Viikinkaari 5), FIN-00014 University of Helsinki, Finland.

出版信息

J Virol. 2006 Sep;80(18):9326-30. doi: 10.1128/JVI.01005-06.

DOI:10.1128/JVI.01005-06
PMID:16940544
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC1563911/
Abstract

Single-stranded RNA (ssRNA) bacteriophages of the family Leviviridae infect gram-negative bacteria. They are restricted to a single host genus. Phage PRR1 is an exception, having a broad host range due to the promiscuity of the receptor encoded by the IncP plasmid. Here we report the complete genome sequence of PRR1. Three proteins homologous with those of other ssRNA phages, i.e., maturation, coat, and replicase proteins, were identified. A fourth protein has a lysis function. Comparison of PRR1 with other members of the Leviviridae family places PRR1 in the genus Levivirus with some characteristics more similar to those of members of the genus Allolevivirus.

摘要

微小RNA病毒科的单链RNA(ssRNA)噬菌体感染革兰氏阴性菌。它们仅限于单一宿主属。噬菌体PRR1是个例外,由于IncP质粒编码的受体具有混杂性,它具有广泛的宿主范围。在此我们报告PRR1的完整基因组序列。鉴定出了三种与其他ssRNA噬菌体的蛋白质同源的蛋白质,即成熟蛋白、外壳蛋白和复制酶蛋白。第四种蛋白质具有裂解功能。将PRR1与微小RNA病毒科的其他成员进行比较后发现,PRR1属于轻小噬菌体属,其某些特征与奇异轻小噬菌体属成员的特征更为相似。

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本文引用的文献

1
Structural basis of RNA binding discrimination between bacteriophages Qbeta and MS2.噬菌体Qβ和MS2之间RNA结合识别的结构基础
Structure. 2006 Mar;14(3):487-95. doi: 10.1016/j.str.2005.12.006.
2
Nucleotide sequence of a ssRNA phage from Acinetobacter: kinship to coliphages.不动杆菌属单链RNA噬菌体的核苷酸序列:与大肠杆菌噬菌体的亲缘关系。
J Gen Virol. 2002 Jun;83(Pt 6):1523-1533. doi: 10.1099/0022-1317-83-6-1523.
3
Translational control by delayed RNA folding: identification of the kinetic trap.通过延迟RNA折叠进行的翻译控制:动力学陷阱的鉴定。
RNA. 2001 Mar;7(3):483-94. doi: 10.1017/s1355838201001984.
4
Comparative protein structure modeling of genes and genomes.基因与基因组的比较蛋白质结构建模
Annu Rev Biophys Biomol Struct. 2000;29:291-325. doi: 10.1146/annurev.biophys.29.1.291.
5
The three-dimensional structure of bacteriophage PP7 from Pseudomonas aeruginosa at 3.7-A resolution.铜绿假单胞菌噬菌体PP7在3.7埃分辨率下的三维结构。
Virology. 2000 Jul 5;272(2):331-7. doi: 10.1006/viro.2000.0373.
6
A long-range pseudoknot in Qbeta RNA is essential for replication.Qβ核糖核酸中的一种远程假结对复制至关重要。
J Mol Biol. 1999 Dec 10;294(4):875-84. doi: 10.1006/jmbi.1999.3274.
7
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J Mol Biol. 1997 Sep 5;271(5):759-73. doi: 10.1006/jmbi.1997.1214.
8
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J Mol Graph. 1996 Feb;14(1):33-8, 27-8. doi: 10.1016/0263-7855(96)00018-5.
9
The crystal structure of bacteriophage Q beta at 3.5 A resolution.噬菌体Qβ在3.5埃分辨率下的晶体结构。
Structure. 1996 May 15;4(5):543-54. doi: 10.1016/s0969-2126(96)00060-3.
10
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J Mol Biol. 1996 Feb 16;256(1):8-19. doi: 10.1006/jmbi.1996.0064.