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聚合物塌缩的非连续分子动力学模拟研究

Discontinuous molecular dynamics simulation study of polymer collapse.

作者信息

Opps Sheldon B, Polson James M, Risk Nick Abou

机构信息

Department of Physics, University of Prince Edward Island, 550 University Avenue, Charlottetown, Prince Edward Island C1A 4P3, Canada.

出版信息

J Chem Phys. 2006 Nov 21;125(19):194904. doi: 10.1063/1.2388270.

Abstract

Discontinuous molecular dynamics simulations were used to study the coil-globule transition of a polymer in an explicit solvent. Two different versions of the model were employed, which are differentiated by the nature of monomer-solvent, solvent-solvent, and nonbonded monomer-monomer interactions. For each case, a model parameter lambda determines the degree of hydrophobicity of the monomers by controlling the degree of energy mismatch between the monomers and solvent particles. We consider a lambda-driven coil-globule transition at constant temperature. The simulations are used to calculate average static structure factors, which are then used to determine the scaling exponents of the system in order to determine the theta-point values lambda(theta) separating the coil from the globule state. For each model we construct coil-globule phase diagrams in terms of lambda and the particle density rho. Additionally, we explore for each model the effects of varying the range of the attractive interactions on the phase boundary separating the coil and globule phases. The results are analyzed in terms of a simple Flory-type theory of the collapse transition.

摘要

采用非连续分子动力学模拟方法研究了聚合物在显式溶剂中的线团-球粒转变。使用了该模型的两种不同版本,它们通过单体-溶剂、溶剂-溶剂和非键合单体-单体相互作用的性质来区分。对于每种情况,一个模型参数λ通过控制单体与溶剂粒子之间的能量失配程度来决定单体的疏水性程度。我们考虑在恒定温度下由λ驱动的线团-球粒转变。模拟用于计算平均静态结构因子,然后用其确定系统的标度指数,以便确定区分线团态和球粒态的θ点值λ(θ)。对于每个模型,我们根据λ和粒子密度ρ构建线团-球粒相图。此外,我们针对每个模型研究了改变吸引相互作用范围对分隔线团相和球粒相的相边界的影响。根据简单的弗洛里型塌缩转变理论对结果进行了分析。

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