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用于理解细菌毒力的基因组学方法。

Genomic approaches to understanding bacterial virulence.

作者信息

Burrack Laura S, Higgins Darren E

机构信息

Department of Microbiology and Molecular Genetics, Harvard Medical School, Boston, MA 02115, USA.

出版信息

Curr Opin Microbiol. 2007 Feb;10(1):4-9. doi: 10.1016/j.mib.2006.11.004. Epub 2006 Dec 11.

Abstract

The genomic sequences of bacterial pathogens and of the host species they infect have greatly increased the understanding of host-pathogen interactions. Sequences of bacterial genomes have led to the identification of virulence factors through the use of bioinformatics, targeted mutant library construction, screening approaches combining transposon mutagenesis and microarray technology, and through the expression of libraries of bacterial proteins within model organisms such as yeast. Host genomic information has also yielded insights into bacterial virulence through transcriptional profiling of host responses to infection and identification of host proteins required for bacterial pathogenicity using knockdown of host gene product expression during infection. Research using genomic approaches to bacterial pathogenesis is a rapidly growing field and will expand further as additional bacterial genome sequences become available and techniques for conducting high-throughput analysis are refined.

摘要

细菌病原体及其感染的宿主物种的基因组序列极大地增进了我们对宿主-病原体相互作用的理解。细菌基因组序列通过生物信息学的应用、靶向突变文库构建、结合转座子诱变和微阵列技术的筛选方法以及在酵母等模式生物中表达细菌蛋白质文库,促成了毒力因子的鉴定。宿主基因组信息还通过对宿主感染反应的转录谱分析以及在感染期间利用宿主基因产物表达的敲低来鉴定细菌致病性所需的宿主蛋白质,从而深入了解细菌毒力。利用基因组方法研究细菌致病机制是一个快速发展的领域,随着更多细菌基因组序列的可得以及高通量分析技术的完善,这一领域将进一步拓展。

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