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碳青霉烯酶OXA-24的晶体结构揭示了碳青霉烯水解机制的相关见解。

Crystal structure of the carbapenemase OXA-24 reveals insights into the mechanism of carbapenem hydrolysis.

作者信息

Santillana Elena, Beceiro Alejandro, Bou Germán, Romero Antonio

机构信息

Departamento de Estructura y Función de Proteínas, Centro de Investigaciones Biológicas, Consejo Superior de Investigaciones Cientificas, Ramiro de Maeztu 9, E-28040 Madrid, Spain.

出版信息

Proc Natl Acad Sci U S A. 2007 Mar 27;104(13):5354-9. doi: 10.1073/pnas.0607557104. Epub 2007 Mar 20.

Abstract

Combating bacterial resistance to beta-lactams, the most widely used antibiotics, is an emergent and clinically important challenge. OXA-24 is a class D beta-lactamase isolated from a multiresistant epidemic clinical strain of Acinetobacter baumannii. We have investigated how OXA-24 specifically hydrolyzes the last resort carbapenem antibiotic, and we have determined the crystal structure of OXA-24 at a resolution of 2.5 A. The structure shows that the carbapenem's substrate specificity is determined by a hydrophobic barrier that is established through the specific arrangement of the Tyr-112 and Met-223 side chains, which define a tunnel-like entrance to the active site. The importance of these residues was further confirmed by mutagenesis studies. Biochemical and microbiological analyses of specific point mutants selected on the basis of structural criteria significantly reduced the catalytic efficiency (k(cat)/K(m)) against carbapenems, whereas the specificity for oxacillin was noticeably increased. This is the previously unrecognized crystal structure that has been obtained for a class D carbapenemase enzyme. Accordingly, this information may help to improve the development of effective new drugs to combat beta-lactam resistance. More specifically, it may help to overcome carbapenem resistance in A. baumannii, probably one of the most worrying infectious threats in hospitals worldwide.

摘要

对抗细菌对β-内酰胺类(使用最广泛的抗生素)的耐药性是一项紧迫且具有临床重要性的挑战。OXA-24是一种从多重耐药的鲍曼不动杆菌流行临床菌株中分离出的D类β-内酰胺酶。我们研究了OXA-24如何特异性水解作为最后手段的碳青霉烯类抗生素,并且我们已确定了分辨率为2.5埃的OXA-24晶体结构。该结构表明,碳青霉烯类的底物特异性由一个疏水屏障决定,该屏障通过Tyr-112和Met-223侧链的特定排列形成,这些侧链定义了一个通向活性位点的隧道状入口。这些残基的重要性通过诱变研究得到了进一步证实。基于结构标准选择的特定点突变体的生化和微生物学分析显著降低了对碳青霉烯类的催化效率(k(cat)/K(m)),而对苯唑西林的特异性则明显增加。这是此前未曾识别的D类碳青霉烯酶的晶体结构。因此,该信息可能有助于改进对抗β-内酰胺耐药性的有效新药的研发。更具体地说,它可能有助于克服鲍曼不动杆菌中的碳青霉烯耐药性,鲍曼不动杆菌可能是全球医院中最令人担忧的感染威胁之一。

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OXA-type carbapenemases.
J Antimicrob Chemother. 2006 Mar;57(3):373-83. doi: 10.1093/jac/dki482. Epub 2006 Jan 30.
5
Beta-lactam antibiotic resistance: a current structural perspective.
Curr Opin Microbiol. 2005 Oct;8(5):525-33. doi: 10.1016/j.mib.2005.08.016.
9
Active site restructuring regulates ligand recognition in class A penicillin-binding proteins.
Proc Natl Acad Sci U S A. 2005 Jan 18;102(3):577-82. doi: 10.1073/pnas.0407186102. Epub 2005 Jan 6.
10
OXA-58, a novel class D {beta}-lactamase involved in resistance to carbapenems in Acinetobacter baumannii.
Antimicrob Agents Chemother. 2005 Jan;49(1):202-8. doi: 10.1128/AAC.49.1.202-208.2005.

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