相似文献
1
Tools for visually exploring biological networks.
Bioinformatics. 2007 Oct 15;23(20):2651-9. doi: 10.1093/bioinformatics/btm401. Epub 2007 Aug 25.
2
GenePro: a Cytoscape plug-in for advanced visualization and analysis of interaction networks.
Bioinformatics. 2006 Sep 1;22(17):2178-9. doi: 10.1093/bioinformatics/btl356.
3
Cerebral: a Cytoscape plugin for layout of and interaction with biological networks using subcellular localization annotation.
Bioinformatics. 2007 Apr 15;23(8):1040-2. doi: 10.1093/bioinformatics/btm057. Epub 2007 Feb 19.
4
jSquid: a Java applet for graphical on-line network exploration.
Bioinformatics. 2008 Jun 15;24(12):1467-8. doi: 10.1093/bioinformatics/btn213. Epub 2008 Apr 29.
5
GOlorize: a Cytoscape plug-in for network visualization with Gene Ontology-based layout and coloring.
Bioinformatics. 2007 Feb 1;23(3):394-6. doi: 10.1093/bioinformatics/btl605. Epub 2006 Nov 24.
6
BioNetBuilder: automatic integration of biological networks.
Bioinformatics. 2007 Feb 1;23(3):392-3. doi: 10.1093/bioinformatics/btl604. Epub 2006 Nov 30.
7
PATIKAweb: a Web interface for analyzing biological pathways through advanced querying and visualization.
Bioinformatics. 2006 Feb 1;22(3):374-5. doi: 10.1093/bioinformatics/bti776. Epub 2005 Nov 15.
8
WebCell: a web-based environment for kinetic modeling and dynamic simulation of cellular networks.
Bioinformatics. 2006 May 1;22(9):1150-1. doi: 10.1093/bioinformatics/btl091. Epub 2006 Mar 16.
9
Design and implementation of a tool for translating SBML into the biochemical stochastic pi-calculus.
Bioinformatics. 2006 Dec 15;22(24):3075-81. doi: 10.1093/bioinformatics/btl516. Epub 2006 Oct 17.
10
BiNoM: a Cytoscape plugin for manipulating and analyzing biological networks.
Bioinformatics. 2008 Mar 15;24(6):876-7. doi: 10.1093/bioinformatics/btm553. Epub 2007 Nov 16.
引用本文的文献
1
Sustainable software development in science - insights from 20 years of Vanted.
J Integr Bioinform. 2025 Jul 1;22(1). doi: 10.1515/jib-2025-0007. eCollection 2025 Mar 1.
2
Mondrian Abstraction and Language Model Embeddings for Differential Pathway Analysis.
bioRxiv. 2024 Aug 19:2024.04.11.589093. doi: 10.1101/2024.04.11.589093.
3
Identification of Key Regulatory Pathways of Basidiocarp Formation in spp. Using Modeling, Simulation and System Biology Studies.
J Fungi (Basel). 2022 Oct 13;8(10):1073. doi: 10.3390/jof8101073.
4
Overview of methods for characterization and visualization of a protein-protein interaction network in a multi-omics integration context.
Front Mol Biosci. 2022 Sep 8;9:962799. doi: 10.3389/fmolb.2022.962799. eCollection 2022.
5
The long non-coding RNA GHSROS reprograms prostate cancer cell lines toward a more aggressive phenotype.
PeerJ. 2021 Feb 1;9:e10280. doi: 10.7717/peerj.10280. eCollection 2021.
6
Uncovering Effective Explanations for Interactive Genomic Data Analysis.
Patterns (N Y). 2020 Sep 11;1(6):100093. doi: 10.1016/j.patter.2020.100093.
7
A new grid- and modularity-based layout algorithm for complex biological networks.
PLoS One. 2019 Aug 29;14(8):e0221620. doi: 10.1371/journal.pone.0221620. eCollection 2019.
8
Analysis of cyclin E co-expression genes reveals nuclear transcription factor Y subunit alpha is an oncogene in gastric cancer.
Chronic Dis Transl Med. 2018 Oct 23;5(1):44-52. doi: 10.1016/j.cdtm.2018.07.003. eCollection 2019 Mar.
9
Metabopolis: scalable network layout for biological pathway diagrams in urban map style.
BMC Bioinformatics. 2019 Apr 15;20(1):187. doi: 10.1186/s12859-019-2779-4.
10
Interleukins and their signaling pathways in the Reactome biological pathway database.
J Allergy Clin Immunol. 2018 Apr;141(4):1411-1416. doi: 10.1016/j.jaci.2017.12.992. Epub 2018 Feb 21.
Zotero 插件