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通过分子模拟研究嵌入电荷蛋白模型的相行为。

Investigation of the phase behavior of an embedded charge protein model through molecular simulation.

作者信息

Rosch Thomas W, Errington Jeffrey R

机构信息

Department of Chemical and Biological Engineering, University at Buffalo, The State University of New York, Buffalo, New York 14260-4200, USA.

出版信息

J Phys Chem B. 2007 Nov 1;111(43):12591-8. doi: 10.1021/jp075455q. Epub 2007 Oct 11.

Abstract

The phase behavior of an embedded-charge model for lysozyme developed by Carlsson and co-workers (J. Phys. Chem. B 2001, 105, 9040) is investigated using grand canonical transition matrix Monte Carlo simulation. Within this model, protein-protein interactions are approximated through a combination of hard-sphere repulsion, isotropic hydrophobic attraction, and screened electrostatic interactions through a series of embedded point charges located at the positions of charged amino acid groups within lysozyme. Liquid-liquid phase diagrams are constructed for a wide range of solution conditions and compared with experimental data. Our results indicate that the model is generally capable of describing qualitative trends in the evolution of protein phase behavior with variation of pH and ionic strength. From a quantitative perspective, model estimates for both the change in critical temperature with variation of the solution conditions and the critical concentration do not agree with experimental results. We find the width of model coexistence curves to be independent of solution conditions and narrow relative to experimentally obtained phase envelopes. Connections between the value of the second virial coefficient evaluated at the critical temperature and the location of the liquid-liquid phase envelope are also examined.

摘要

利用巨正则转移矩阵蒙特卡罗模拟研究了卡尔森及其同事开发的溶菌酶嵌入电荷模型的相行为(《物理化学杂志B》2001年,第105卷,第9040页)。在该模型中,蛋白质-蛋白质相互作用通过硬球排斥、各向同性疏水吸引以及通过位于溶菌酶中带电氨基酸基团位置的一系列嵌入点电荷进行的屏蔽静电相互作用的组合来近似。构建了广泛溶液条件下的液-液相图,并与实验数据进行了比较。我们的结果表明,该模型通常能够描述随着pH值和离子强度变化蛋白质相行为演变的定性趋势。从定量角度来看,模型对临界温度随溶液条件变化的变化以及临界浓度的估计与实验结果不一致。我们发现模型共存曲线的宽度与溶液条件无关,并且相对于实验获得的相包络较窄。还研究了在临界温度下评估的第二维里系数的值与液-液相包络位置之间的联系。

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