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适用于Windows的四倍体图谱:同源四倍体物种的连锁图谱构建和数量性状基因座定位

TetraploidMap for Windows: linkage map construction and QTL mapping in autotetraploid species.

作者信息

Hackett Christine Anne, Milne Iain, Bradshaw John E, Luo Zewei

机构信息

Biomathematics and Statistics Scotland, Scottish Crop Research Institute, Dundee, UK.

出版信息

J Hered. 2007 Nov-Dec;98(7):727-9. doi: 10.1093/jhered/esm086. Epub 2007 Oct 26.

Abstract

An earlier program, TetraploidMap, enabled linkage analysis to be performed for autotetraploid species, with a text-based input and output. The current program, TetraploidMap for Windows, is considerably enhanced, and now goes beyond linkage analysis to perform quantitative trait locus (QTL) interval mapping, with a range of models and thresholds assessed by permutation tests. A Windows-based interface facilitates data entry and exploration. TetraploidMap for Windows is freely available from the Web site of Bioinformatics and Statistics Scotland at http://www.bioss.ac.uk/ (user-friendly software).

摘要

早期的程序TetraploidMap能够对同源四倍体物种进行连锁分析,其输入和输出均基于文本。当前的程序Windows版TetraploidMap有了显著改进,现在不仅可以进行连锁分析,还能进行数量性状基因座(QTL)区间作图,通过排列检验评估一系列模型和阈值。基于Windows的界面便于数据输入和探索。Windows版TetraploidMap可从苏格兰生物信息学与统计学网站(http://www.bioss.ac.uk/ )免费获取(用户友好型软件)。

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