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基因家族大小的幂律分布是由基因家族间假基因化率的异质性驱动的。

The power-law distribution of gene family size is driven by the pseudogenisation rate's heterogeneity between gene families.

作者信息

Hughes Timothy, Liberles David A

机构信息

Computational Biology Unit, BCCS, University of Bergen, Bergen, Norway.

出版信息

Gene. 2008 May 15;414(1-2):85-94. doi: 10.1016/j.gene.2008.02.014. Epub 2008 Mar 10.

Abstract

Genome sequencing has shown that the number of homologous gene families of a given size declines rapidly with family size. A power-law has been shown to provide the best mathematical description of this relationship. However, it remains unclear what evolutionary forces drive this observation. We use models of gene duplication, pseudogenisation and accumulation of replacement substitutions, which have been validated and parameterised using genomic data, to build a model of homologous gene evolution. We use this model to simulate the evolution of the distribution of gene family size and show that the power-law distribution is driven by the pseudogenisation rate's heterogeneity across gene families and its correlation within families. Moreover, we show that gene duplication and pseudogenisation are necessary and sufficient for the emergence of the power-law.

摘要

基因组测序表明,给定大小的同源基因家族数量会随着家族大小而迅速减少。幂律已被证明能为此种关系提供最佳数学描述。然而,尚不清楚是哪些进化力量导致了这一现象。我们使用基因复制、假基因化以及置换替代积累的模型,这些模型已通过基因组数据进行了验证和参数化,以此构建同源基因进化模型。我们用此模型来模拟基因家族大小分布的进化,结果表明幂律分布是由基因家族间假基因化率的异质性及其家族内的相关性所驱动的。此外,我们还表明基因复制和假基因化对于幂律的出现是必要且充分的。

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