Veronesi Giulia, Giachini Lisa, Francia Francesco, Mallardi Antonia, Palazzo Gerardo, Boscherini Federico, Venturoli Giovanni
Dipartimento di Fisica, Università di Bologna, Bologna, Italy.
Biophys J. 2008 Jul;95(2):814-22. doi: 10.1529/biophysj.108.132654. Epub 2008 May 2.
We report on the x-ray absorption fine structure of the Fe(2+) site in photosynthetic reaction centers from Rhodobacter sphaeroides. Crystallographic studies show that Fe(2+) is ligated with four N(epsilon) atoms from four histidine (His) residues and two O(epsilon) atoms from a Glu residue. By considering multiple scattering contributions to the x-ray absorption fine structure function, we improved the structural resolution of the site: His residues were split into two groups, characterized by different Fe-N(epsilon) distances, and two distinct Fe-O(epsilon) bond lengths resolved. The effect of the environment was studied by embedding the reaction centers into a polyvinyl alcohol film and into a dehydrated trehalose matrix. Incorporation into trehalose caused elongation in one of the two Fe-N(epsilon) distances, and in one Fe-O(epsilon) bond length, compared with the polyvinyl alcohol film. The asymmetry detected in the cluster of His residues and its response to incorporation into trehalose are ascribed to the hydrogen bonds between two His residues and the quinone acceptors. The structural distortions observed in the trehalose matrix indicate a strong interaction between the reaction-centers surface and the water-trehalose matrix, which propagates deeply into the interior of the protein. The absence of matrix effects on the Debye-Waller factors is brought back to the static heterogeneity and rigidity of the ligand cluster.
我们报道了球形红细菌光合反应中心中Fe(2+)位点的X射线吸收精细结构。晶体学研究表明,Fe(2+)与来自四个组氨酸(His)残基的四个N(ε)原子以及来自一个谷氨酸残基的两个O(ε)原子配位。通过考虑对X射线吸收精细结构函数的多重散射贡献,我们提高了该位点的结构分辨率:His残基被分为两组,其特征在于不同的Fe-N(ε)距离,并且分辨出两个不同的Fe-O(ε)键长。通过将反应中心嵌入聚乙烯醇薄膜和脱水海藻糖基质中来研究环境的影响。与聚乙烯醇薄膜相比,掺入海藻糖会导致两个Fe-N(ε)距离之一以及一个Fe-O(ε)键长延长。在His残基簇中检测到的不对称性及其对掺入海藻糖的响应归因于两个His残基与醌受体之间的氢键。在海藻糖基质中观察到的结构畸变表明反应中心表面与水-海藻糖基质之间存在强烈相互作用,这种相互作用深入到蛋白质内部。基质对德拜-瓦勒因子没有影响归因于配体簇的静态异质性和刚性。