Suppr超能文献

针铁矿体相和(010)面的周期性密度泛函理论计算。

Periodic density functional theory calculations of bulk and the (010) surface of goethite.

机构信息

Department of Geosciences and Earth & Environmental Systems Institute, The Pennsylvania State University, University Park, PA 16802, USA.

出版信息

Geochem Trans. 2008 May 13;9:4. doi: 10.1186/1467-4866-9-4.

Abstract

BACKGROUND

Goethite is a common and reactive mineral in the environment. The transport of contaminants and anaerobic respiration of microbes are significantly affected by adsorption and reduction reactions involving goethite. An understanding of the mineral-water interface of goethite is critical for determining the molecular-scale mechanisms of adsorption and reduction reactions. In this study, periodic density functional theory (DFT) calculations were performed on the mineral goethite and its (010) surface, using the Vienna Ab Initio Simulation Package (VASP).

RESULTS

Calculations of the bulk mineral structure accurately reproduced the observed crystal structure and vibrational frequencies, suggesting that this computational methodology was suitable for modeling the goethite-water interface. Energy-minimized structures of bare, hydrated (one H2O layer) and solvated (three H2O layers) (010) surfaces were calculated for 1 x 1 and 3 x 3 unit cell slabs. A good correlation between the calculated and observed vibrational frequencies was found for the 1 x 1 solvated surface. However, differences between the 1 x 1 and 3 x 3 slab calculations indicated that larger models may be necessary to simulate the relaxation of water at the interface. Comparison of two hydrated surfaces with molecularly and dissociatively adsorbed H2O showed a significantly lower potential energy for the former.

CONCLUSION

Surface Fe-O and (Fe)O-H bond lengths are reported that may be useful in surface complexation models (SCM) of the goethite (010) surface. These bond lengths were found to change significantly as a function of solvation (i.e., addition of two extra H2O layers above the surface), indicating that this parameter should be carefully considered in future SCM studies of metal oxide-water interfaces.

摘要

背景

针铁矿是环境中常见且具有反应活性的矿物。污染物的传输和微生物的厌氧呼吸会受到针铁矿的吸附和还原反应的显著影响。理解针铁矿的矿物-水界面对于确定吸附和还原反应的分子尺度机制至关重要。在这项研究中,使用维也纳从头算模拟包(VASP)对矿物针铁矿及其(010)表面进行了周期性密度泛函理论(DFT)计算。

结果

对块状矿物结构的计算准确地再现了观察到的晶体结构和振动频率,表明这种计算方法适合于模拟针铁矿-水界面。计算了裸露、水合(一层 H2O)和溶剂化(三层 H2O)(010)表面的 1x1 和 3x3 单元胞片的能量最小化结构。发现计算得到的和观察到的 1x1 溶剂化表面的振动频率之间存在很好的相关性。然而,1x1 和 3x3 片层计算之间的差异表明,可能需要更大的模型来模拟界面处水的弛豫。比较了两种具有分子和离解吸附 H2O 的水合表面,前者的势能明显较低。

结论

报道了表面 Fe-O 和(Fe)O-H 键长,这可能对针铁矿(010)表面的表面络合模型(SCM)有用。发现这些键长随溶剂化(即在表面上方添加两个额外的 H2O 层)而显著变化,这表明在未来金属氧化物-水界面的 SCM 研究中应仔细考虑这一参数。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/be6a/2409307/25758057e47d/1467-4866-9-4-1.jpg

文献AI研究员

20分钟写一篇综述,助力文献阅读效率提升50倍。

立即体验

用中文搜PubMed

大模型驱动的PubMed中文搜索引擎

马上搜索

文档翻译

学术文献翻译模型,支持多种主流文档格式。

立即体验