Lan Ganhui, Dajkovic Alex, Wirtz Denis, Sun Sean X
Department of Mechanical Engineering, The Johns Hopkins University, Baltimore, Maryland, USA.
Biophys J. 2008 Oct;95(8):4045-56. doi: 10.1529/biophysj.108.132837. Epub 2008 Jul 11.
FtsZ is a tubulin homolog essential for prokaryotic cell division. In living bacteria, FtsZ forms a ringlike structure (Z-ring) at the cell midpoint. Cell division coincides with a gradual contraction of the Z-ring, although the detailed molecular structure of the Z-ring is unknown. To reveal the structural properties of FtsZ, an understanding of FtsZ filament and bundle formation is needed. We develop a kinetic model that describes the polymerization and bundling mechanism of FtsZ filaments. The model reveals the energetics of the FtsZ filament formation and the bundling energy between filaments. A weak lateral interaction between filaments is predicted by the model. The model is able to fit the in vitro polymerization kinetics data of another researcher, and explains the cooperativity observed in FtsZ kinetics and the critical concentration in different buffer media. The developed model is also applicable for understanding the kinetics and energetics of other bundling biopolymer filaments.
FtsZ是一种对原核细胞分裂至关重要的微管蛋白同源物。在活细菌中,FtsZ在细胞中点形成环状结构(Z环)。细胞分裂与Z环的逐渐收缩同时发生,尽管Z环的详细分子结构尚不清楚。为了揭示FtsZ的结构特性,需要了解FtsZ丝状物和束的形成。我们开发了一个动力学模型,该模型描述了FtsZ丝状物的聚合和束形成机制。该模型揭示了FtsZ丝状物形成的能量学以及丝状物之间的束形成能量。该模型预测丝状物之间存在弱横向相互作用。该模型能够拟合另一位研究人员的体外聚合动力学数据,并解释在FtsZ动力学中观察到的协同性以及不同缓冲介质中的临界浓度。所开发的模型也适用于理解其他成束生物聚合物丝状物的动力学和能量学。