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楔形鳎(Dicologoglossa cuneata,鲽形目)的着丝粒卫星主要由在其他脊椎动物着丝粒DNA中保守的序列基序组成。

The centromeric satellite of the wedge sole (Dicologoglossa cuneata, Pleuronectiformes) is composed mainly of a sequence motif conserved in other vertebrate centromeric DNAs.

作者信息

de la Herrán R, Robles F, Navas J I, López-Flores I, Herrera M, Hachero I, Garrido-Ramos M A, Ruiz Rejón C, Ruiz Rejón M

机构信息

Departamento de Genética, Facultad de Ciencias, Universidad de Granada, Granada, Spain.

出版信息

Cytogenet Genome Res. 2008;121(3-4):271-6. doi: 10.1159/000138896. Epub 2008 Aug 29.

Abstract

Here, a new satellite-DNA family is isolated and characterized from wedge sole, Dicologoglossa cuneata Moreau, 1881 (Pleuronectiformes), a fish having a small genome. This satellite-DNA family of sequences was isolated by conventional cloning after digestion of genomic DNA with the DraI restriction enzyme. Repeat units are 171 bp in length with a high AT content (63%). Several runs of consecutive adenines and thymines were found, and concomitantly computer analyses revealed that these regions are prone to acquire stable sequence-directed curvature. Especially remarkable is that the DraI sequences are composed almost entirely of the repetition of up to fourteen 9-bp motifs (T/C)GTC(A/C)AAAA similar to other vertebrate centromeric satellite-DNA sequences. In fact, we demonstrate the origin of this satellite through duplication of this motif plus the addition of a stretch of cytosines. The centromeric location and the presence in this satellite-DNA sequence of not only different vertebrate motifs (CENP-B box, pJalpha) but also others such as the CDEIII motif of Saccharomyces cerevisiae reveal a possible role in centromere function. All these characteristics provide important information on the origin, function, and the evolution of the centromeric satellite DNAs in wedge sole.

摘要

在此,我们从楔形鳎(Dicologoglossa cuneata Moreau,1881年,鲽形目)中分离并鉴定了一个新的卫星DNA家族,楔形鳎是一种基因组较小的鱼类。在用DraI限制性内切酶消化基因组DNA后,通过常规克隆分离出了这个卫星DNA序列家族。重复单元长度为171 bp,AT含量较高(63%)。发现了几段连续的腺嘌呤和胸腺嘧啶,同时计算机分析表明这些区域易于形成稳定的序列导向弯曲。特别值得注意的是,DraI序列几乎完全由多达14个9 bp基序(T/C)GTC(A/C)AAAA的重复组成,这与其他脊椎动物着丝粒卫星DNA序列相似。事实上,我们通过该基序的复制以及一段胞嘧啶的添加证明了这个卫星的起源。着丝粒定位以及该卫星DNA序列中不仅存在不同的脊椎动物基序(CENP - B盒、pJalpha),还存在其他基序,如酿酒酵母的CDEIII基序,揭示了其在着丝粒功能中可能发挥的作用。所有这些特征为楔形鳎着丝粒卫星DNA的起源、功能和进化提供了重要信息。

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