Sella Guy
Department of Evolution, Systematics and Ecology, The Alexander Silberman Institute of Life Sciences, The Hebrew University, Jerusalem 91904, Israel.
Theor Popul Biol. 2009 Feb;75(1):30-4. doi: 10.1016/j.tpb.2008.10.001. Epub 2008 Nov 1.
Because nearly neutral substitutions are thought to contribute substantially to molecular evolution, and much of our insight about the workings of nearly neutral evolution relies on theory, solvable models of this process are of particular interest. Here, I present an analytical method for solving models of nearly neutral evolution at steady state. The steady state solution applies to any constant fitness landscape under a dynamic of successive fixations, each of which occurs on the background of the population's most recent common ancestor. Because this dynamic neglects the effects of polymorphism in the population beyond the mutant allele under consideration, the steady state solution provides a decent approximation of evolutionary dynamics when the population mutation rate is low (Nu<<1). To demonstrate the method, I apply it to two examples: Fisher's geometric model (FGM), and a simple model of molecular evolution. Since recent papers have studied the steady state behavior of FGM under this dynamic, I analyze its behavior in detail and compare the results with previous work.
由于近中性替换被认为对分子进化有重大贡献,并且我们对近中性进化机制的许多理解都依赖于理论,因此这个过程的可解模型特别受关注。在这里,我提出一种用于求解近中性进化稳态模型的解析方法。稳态解适用于在连续固定动态下的任何恒定适应度景观,每次固定都发生在种群最近共同祖先的背景上。由于这种动态忽略了种群中除所考虑的突变等位基因之外的多态性影响,当种群突变率较低(Nu<<1)时,稳态解为进化动态提供了一个合理的近似。为了演示该方法,我将其应用于两个例子:费希尔几何模型(FGM)和一个简单的分子进化模型。由于最近的论文研究了在此动态下FGM的稳态行为,我详细分析了它的行为并将结果与先前的工作进行比较。