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金黄色葡萄球菌中可能的tRNA修饰GTP酶(TrmE)的结晶及初步X射线晶体学分析。

Crystallization and preliminary X-ray crystallographic analysis of the probable tRNA-modification GTPase (TrmE) from Staphylococcus aureus.

作者信息

Priyadarshi Amit, Nam Ki Hyun, Kim Eunice Eunkyeong, Hwang Kwang Yeon

机构信息

Biomedical Research Center, Life Science Division, Korea Institute of Science and Technology, 39-1 Hawolgok-dong, Seongbuk-gu, Seoul 136-791, Republic of Korea.

出版信息

Acta Crystallogr Sect F Struct Biol Cryst Commun. 2008 Dec 1;64(Pt 12):1166-8. doi: 10.1107/S1744309108036579. Epub 2008 Nov 28.

Abstract

Probable tRNA-modification GTPase (TrmE) is a guanine nucleotide-binding protein that is conserved between bacteria and humans. GTPase hydrolyzes GTP and plays a pivotal role in signalling pathways. In this study, TrmE from Staphylococcus aureus was overexpressed in Escherichia coli. The enzyme was found to crystallize at 295 K when ammonium sulfate was used as a precipitant. X-ray diffraction data were collected to 2.9 A resolution from the crystallized enzyme using synchrotron radiation. The crystal was found to belong to the cubic space group I23, with unit-cell parameters a = b = c = 229.47 A, alpha = beta = gamma = 90 degrees . The crystal is likely to contain four monomers in the asymmetric unit, with a corresponding V(M) of 2.4 A(3) Da(-1) and a solvent content of 50%.

摘要

可能的tRNA修饰GTP酶(TrmE)是一种鸟嘌呤核苷酸结合蛋白,在细菌和人类之间保守。GTP酶水解GTP并在信号通路中起关键作用。在本研究中,金黄色葡萄球菌的TrmE在大肠杆菌中过表达。当使用硫酸铵作为沉淀剂时,发现该酶在295 K结晶。使用同步辐射从结晶酶收集X射线衍射数据至2.9 Å分辨率。发现该晶体属于立方空间群I23,晶胞参数a = b = c = 229.47 Å,α = β = γ = 90°。该晶体在不对称单元中可能包含四个单体,相应的V(M)为2.4 ų Da⁻¹,溶剂含量为50%。

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本文引用的文献

1
Processing of X-ray diffraction data collected in oscillation mode.
Methods Enzymol. 1997;276:307-26. doi: 10.1016/S0076-6879(97)76066-X.
2
Dimerisation-dependent GTPase reaction of MnmE: how potassium acts as GTPase-activating element.
EMBO J. 2006 Jun 21;25(12):2940-51. doi: 10.1038/sj.emboj.7601171. Epub 2006 Jun 8.
4
The structure of the TrmE GTP-binding protein and its implications for tRNA modification.
EMBO J. 2005 Jan 12;24(1):23-33. doi: 10.1038/sj.emboj.7600507. Epub 2004 Dec 16.
5
The GTPase activity and C-terminal cysteine of the Escherichia coli MnmE protein are essential for its tRNA modifying function.
J Biol Chem. 2003 Aug 1;278(31):28378-87. doi: 10.1074/jbc.M301381200. Epub 2003 Apr 30.
6
Characterization of GTPase activity of TrmE, a member of a novel GTPase superfamily, from Thermotoga maritima.
J Bacteriol. 2000 Dec;182(24):7078-82. doi: 10.1128/JB.182.24.7078-7082.2000.
8
Solvent content of protein crystals.
J Mol Biol. 1968 Apr 28;33(2):491-7. doi: 10.1016/0022-2836(68)90205-2.

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