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[寡聚(2'-O-甲基核糖核苷酸)及其衍生物:III。寡聚(2'-O-甲基核糖核苷酸)的5'-单芘基和5'-双芘基衍生物及其3'-修饰类似物:合成与性质]

[Oligo(2'-O-methylribonucleotides) and their derivatives: III. 5'-mono- and 5'-bispyrenyl derivatives of oligo(2'-O-methylribonucleotides) and their 3'-modified analogues: synthesis and properties].

作者信息

Novopashina D S, Totskaia O S, Kholodar' S A, Meshchaninova M I, Ven'iaminova A G

出版信息

Bioorg Khim. 2008 Sep-Oct;34(5):671-82. doi: 10.1134/s1068162008050105.

Abstract

5'-Pyrenylmethylphosphoramidite and 5'-bispyrenylmethylphosphordiamidite derivatives of oligo(2'-O-methylribonucleotides) and their analogues with thymidine attached at their 3'-termini by a 3'-3'-phosphodiester internucleotide bond (inverted thymidine) were synthesized. The effect of the pyrene residue(s) on the thermal stability of duplexes of the modified oligonucleotides with RNA and DNA was studied. A possibility of detection of hybridization of 5'-mono- and 5'-bispyrenyl derivatives with RNA and DNA targets in solution was demonstrated according to the changes in fluorescence. 5'-Pyrenylmethylphosphoramidite derivatives of oligo(2'-O-methylribonucleotides) and their inverted analogues were shown to serve as sensitive probes for the detection of oligonucleotide substitutions in RNA and DNA by the method of thermal denaturation of the formed duplexes detected according to changes in their fluorescence.

摘要

合成了寡聚(2'-O-甲基核糖核苷酸)的5'-芘甲基亚磷酰胺和5'-双芘甲基磷二酰胺衍生物,以及它们的类似物,这些类似物在其3'-末端通过3'-3'-磷酸二酯核苷酸间键连接胸腺嘧啶(反向胸腺嘧啶)。研究了芘残基对修饰寡核苷酸与RNA和DNA双链体热稳定性的影响。根据荧光变化证明了在溶液中检测5'-单芘和5'-双芘衍生物与RNA和DNA靶标的杂交可能性。寡聚(2'-O-甲基核糖核苷酸)的5'-芘甲基亚磷酰胺衍生物及其反向类似物被证明可作为灵敏探针,通过根据形成的双链体荧光变化检测其热变性的方法,用于检测RNA和DNA中的寡核苷酸取代。

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