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多基因家族进化的建模

Modelling the evolution of multi-gene families.

作者信息

Nye Tom M W

机构信息

School of Mathematics and Statistics, Newcastle University, Newcastle, UK.

出版信息

Stat Methods Med Res. 2009 Oct;18(5):487-504. doi: 10.1177/0962280208099450. Epub 2009 Jan 19.

Abstract

A number of biological processes can lead to genes being copied within the genome of some given species. Duplicate genes of this form are called paralogs and such genes share a high degree sequence similarity as well as often having closely related functions. Some genes have become widely duplicated to form multigene families in which the copies are distributed both within the genomes of individual species and across different species. Statistical modelling of gene duplication and the evolution of multi-gene families currently lags behind well-established models of DNA sequence evolution despite an increasing volume of available data, but the analysis of multi-gene families is important as part of a wider effort to understand evolution at the genomic level. This article reviews existing approaches to modelling multi-gene families and presents various challenges and possibilities for this exciting area of research.

摘要

许多生物学过程可导致基因在某个特定物种的基因组内被复制。这种形式的重复基因被称为旁系同源基因,这些基因不仅具有高度的序列相似性,而且通常具有密切相关的功能。一些基因已被广泛复制,形成了多基因家族,其中的基因拷贝既分布在单个物种的基因组内,也分布在不同物种之间。尽管可用数据量不断增加,但目前基因复制和多基因家族进化的统计建模仍落后于成熟的DNA序列进化模型,不过多基因家族分析作为更广泛的基因组水平进化理解工作的一部分,具有重要意义。本文综述了多基因家族建模的现有方法,并介绍了这一令人兴奋的研究领域面临的各种挑战和可能性。

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