Suppr超能文献

2'-脱氧鸟苷5'-单磷酸阴离子电子脱离能的测定:构象的影响

Determination of the electron-detachment energies of 2'-deoxyguanosine 5'-monophosphate anion: influence of the conformation.

作者信息

Rubio Mercedes, Roca-Sanjuán Daniel, Serrano-Andrés Luis, Merchán Manuela

机构信息

Instituto de Ciencia Molecular, Universitat de València, Apartado 22085, ES-46071 Valencia, Spain.

出版信息

J Phys Chem B. 2009 Feb 26;113(8):2451-7. doi: 10.1021/jp806105h.

Abstract

The vertical electron-detachment energies (VDEs) of the singly charged 2'-deoxyguanosine 5'-monophosphate anion (dGMP-) are determined by using the multiconfigurational second-order perturbation CASPT2 method at the MP2 ground-state equilibrium geometry of relevant conformers. The origin of the unique low-energy band in the gas phase photoelectron spectrum of dGMP-, with maximum at around 5.05 eV, is unambiguously assigned to electron detachment from the highest occupied molecular orbital of pi-character belonging to guanine fragment of a syn conformation. The presence of a short H-bond linking the 2-amino and phosphate groups, the guanine moiety acting as proton donor, is precisely responsible for the pronounced decrease of the computed VDE with respect to that obtained in other conformations. As a whole, the present research supports the nucleobase as the site with the lowest ionization potential in negatively charged (deprotonated) nucleotides at the most stable conformations as well as for B-DNA-like type arrangements, in agreement with experimental evidence.

摘要

通过在相关构象体的MP2基态平衡几何结构下使用多组态二阶微扰CASPT2方法,测定了单电荷2'-脱氧鸟苷5'-单磷酸阴离子(dGMP-)的垂直电子脱离能(VDE)。dGMP-气相光电子能谱中独特的低能带,其最大值在约5.05 eV处,明确归因于从属于顺式构象鸟嘌呤片段的具有π特征的最高占据分子轨道的电子脱离。连接2-氨基和磷酸基团(鸟嘌呤部分作为质子供体)的短氢键的存在,正是导致计算得到的VDE相对于其他构象显著降低的原因。总体而言,本研究支持核碱基是最稳定构象以及B-DNA样类型排列中带负电荷(去质子化)核苷酸中电离势最低的位点,这与实验证据一致。

文献AI研究员

20分钟写一篇综述,助力文献阅读效率提升50倍。

立即体验

用中文搜PubMed

大模型驱动的PubMed中文搜索引擎

马上搜索

文档翻译

学术文献翻译模型,支持多种主流文档格式。

立即体验