de Graaf Dirk C, Aerts Maarten, Danneels Ellen, Devreese Bart
Laboratory of Zoophysiology, Ghent University, B-9000 Ghent, Belgium.
J Proteomics. 2009 Mar 6;72(2):145-54. doi: 10.1016/j.jprot.2009.01.017. Epub 2009 Jan 21.
With the complete sequencing of its genome, the honey bee is now a preferred model organism for Hymenoptera species, also with respect to venomic studies. Major pitfalls in proteomic profiling are: i) highly abundant proteins masking low-copy number proteins; ii) high heterogeneity in proteomes due to isoforms, protease activity and PTMs; iii) the inability for protein function assignment. If genomic information is not available, proteins still might be identified through cross-species protein identifications or MS/MS data-based de novo sequencing techniques. Venomic approaches discovered several new proteins and peptides from honey bees, bumble bees, ants and different wasp species, and some of these constituents were proven to be of immunological significance. Further digging in the proteome/peptidome will yield more so-called "venom trace elements" with only a local function in the venom duct or reservoir or released by leakage of the gland tissue. An impressive list of recombinants venom proteins has become available from a diverse range of Hymenopterans. Protein microarray allows the determination and monitoring of allergic patients' IgE reactivity profiles to disease-causing allergens using single measurements and minute amounts of serum. The information the physician will get from such a single run will largely exceed the output from current IgE capturing tools using whole venom preparations.
随着蜜蜂基因组的完全测序,就毒液组学研究而言,蜜蜂现在是膜翅目物种的首选模式生物。蛋白质组分析中的主要问题包括:i)高丰度蛋白质掩盖低拷贝数蛋白质;ii)由于异构体、蛋白酶活性和翻译后修饰,蛋白质组存在高度异质性;iii)无法进行蛋白质功能分配。如果没有基因组信息,仍然可以通过跨物种蛋白质鉴定或基于串联质谱数据的从头测序技术来鉴定蛋白质。毒液组学方法从蜜蜂、大黄蜂、蚂蚁和不同黄蜂物种中发现了几种新的蛋白质和肽,其中一些成分被证明具有免疫学意义。对蛋白质组/肽组的进一步深入研究将产生更多所谓的“毒液微量元素”,它们仅在毒腺管或储液器中具有局部功能,或者通过腺体组织泄漏而释放。来自各种膜翅目的重组毒液蛋白质清单令人印象深刻。蛋白质微阵列能够通过单次测量和微量血清来确定和监测过敏患者对致病过敏原的IgE反应谱。医生从这样一次检测中获得的信息将大大超过目前使用全毒液制剂的IgE捕获工具的输出。