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Quantitative strategies to fuel the merger of discovery and hypothesis-driven shotgun proteomics.
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A multi-model statistical approach for proteomic spectral count quantitation.
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Targeted proteomics for validation of biomarkers in clinical samples.
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Coherent pipeline for biomarker discovery using mass spectrometry and bioinformatics.
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Informatics platform for global proteomic profiling and biomarker discovery using liquid chromatography-tandem mass spectrometry.
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A correlation algorithm for the automated quantitative analysis of shotgun proteomics data.
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Experimental Null Method to Guide the Development of Technical Procedures and to Control False-Positive Discovery in Quantitative Proteomics.
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Differential protein expression and basal lamina remodeling in human heart failure.
Proteomics Clin Appl. 2016 May;10(5):585-96. doi: 10.1002/prca.201500099. Epub 2016 Jan 25.
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Liver expression quantitative trait loci: a foundation for pharmacogenomic research.
Front Genet. 2012 Aug 14;3:153. doi: 10.3389/fgene.2012.00153. eCollection 2012.
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Transcriptome and proteome research in veterinary science: what is possible and what questions can be asked?
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Building protein-protein interaction networks with proteomics and informatics tools.
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Glycan labeling strategies and their use in identification and quantification.
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Enriching quantitative proteomics with SI(N).
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2
Statistical application and challenges in global gel-free proteomic analysis by mass spectrometry.
Crit Rev Biotechnol. 2008;28(4):297-307. doi: 10.1080/07388550802543158.
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High quality catalog of proteotypic peptides from human heart.
J Proteome Res. 2008 Nov;7(11):5055-61. doi: 10.1021/pr800239e. Epub 2008 Sep 20.
6
Identifying differences in protein expression levels by spectral counting and feature selection.
Genet Mol Res. 2008 Apr 15;7(2):342-56. doi: 10.4238/vol7-2gmr426.
7
An integrated, directed mass spectrometric approach for in-depth characterization of complex peptide mixtures.
Mol Cell Proteomics. 2008 Nov;7(11):2138-50. doi: 10.1074/mcp.M700498-MCP200. Epub 2008 May 29.
10
An assessment of software solutions for the analysis of mass spectrometry based quantitative proteomics data.
J Proteome Res. 2008 Jan;7(1):51-61. doi: 10.1021/pr700758r. Epub 2008 Jan 4.

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