Czar Michael J, Cai Yizhi, Peccoud Jean
Virginia Bioinformatics Institute at Virginia Polytechnic and State University, Blacksburg, VA 24061, USA.
Nucleic Acids Res. 2009 Jul;37(Web Server issue):W40-7. doi: 10.1093/nar/gkp361. Epub 2009 May 8.
Chemical synthesis of custom DNA made to order calls for software streamlining the design of synthetic DNA sequences. GenoCAD (www.genocad.org) is a free web-based application to design protein expression vectors, artificial gene networks and other genetic constructs composed of multiple functional blocks called genetic parts. By capturing design strategies in grammatical models of DNA sequences, GenoCAD guides the user through the design process. By successively clicking on icons representing structural features or actual genetic parts, complex constructs composed of dozens of functional blocks can be designed in a matter of minutes. GenoCAD automatically derives the construct sequence from its comprehensive libraries of genetic parts. Upon completion of the design process, users can download the sequence for synthesis or further analysis. Users who elect to create a personal account on the system can customize their workspace by creating their own parts libraries, adding new parts to the libraries, or reusing designs to quickly generate sets of related constructs.
定制DNA的化学合成需要软件来简化合成DNA序列的设计。GenoCAD(www.genocad.org)是一款基于网络的免费应用程序,用于设计蛋白质表达载体、人工基因网络以及其他由称为遗传元件的多个功能模块组成的遗传构建体。通过在DNA序列的语法模型中捕捉设计策略,GenoCAD引导用户完成设计过程。通过依次点击代表结构特征或实际遗传元件的图标,由数十个功能模块组成的复杂构建体可以在几分钟内设计完成。GenoCAD会从其全面的遗传元件库中自动推导构建体序列。设计过程完成后,用户可以下载序列用于合成或进一步分析。选择在该系统上创建个人账户的用户可以通过创建自己的元件库、向库中添加新元件或重复使用设计来快速生成相关构建体集,从而定制自己的工作区。