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氘同位素对蛋白质中¹⁵N主链化学位移的影响。

Deuterium isotope effects on 15N backbone chemical shifts in proteins.

作者信息

Abildgaard Jens, Hansen Poul Erik, Manalo Marlon N, LiWang Andy

机构信息

Department of Science, Systems and Models, Roskilde University, Roskilde, Denmark.

出版信息

J Biomol NMR. 2009 Jul;44(3):119-26. doi: 10.1007/s10858-009-9316-0. Epub 2009 May 20.

Abstract

Quantum mechanical calculations are presented that predict that one-bond deuterium isotope effects on the (15)N chemical shift of backbone amides of proteins, (1)Delta(15)N(D), are sensitive to backbone conformation and hydrogen bonding. A quantitative empirical model for (1)Delta(15)N(D) including the backbone dihedral angles, Phi and Psi, and the hydrogen bonding geometry is presented for glycine and amino acid residues with aliphatic side chains. The effect of hydrogen bonding is rationalized in part as an electric-field effect on the first derivative of the nuclear shielding with respect to N-H bond length. Another contributing factor is the effect of increased anharmonicity of the N-H stretching vibrational state upon hydrogen bonding, which results in an altered N-H/N-D equilibrium bond length ratio. The N-H stretching anharmonicity contribution falls off with the cosine of the N-H...O bond angle. For residues with uncharged side chains a very good prediction of isotope effects can be made. Thus, for proteins with known secondary structures, (1)Delta(15)N(D) can provide insights into hydrogen bonding geometries.

摘要

本文展示了量子力学计算结果,该计算预测,蛋白质主链酰胺的(15)N化学位移上的一键氘同位素效应,即(1)Δ(15)N(D),对主链构象和氢键敏感。本文给出了一个关于(1)Δ(15)N(D)的定量经验模型,该模型包括主链二面角、Phi和Psi,以及甘氨酸和具有脂肪族侧链的氨基酸残基的氢键几何结构。氢键的影响部分可解释为电场对核屏蔽相对于N-H键长的一阶导数的影响。另一个促成因素是氢键作用下N-H伸缩振动状态非谐性增加的影响,这导致N-H/N-D平衡键长比发生变化。N-H伸缩非谐性贡献随N-H...O键角的余弦而下降。对于具有不带电侧链的残基,可以对同位素效应进行很好的预测。因此,对于具有已知二级结构的蛋白质,(1)Δ(15)N(D)可以提供有关氢键几何结构的见解。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b0e4/2697368/004395fb8c7c/10858_2009_9316_Fig1_HTML.jpg

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