Lewis Charles A, Wolfenden Richard
Department of Biochemistry and Biophysics, University of North Carolina, Chapel Hill, North Carolina 27599, USA.
Biochemistry. 2009 Sep 15;48(36):8738-45. doi: 10.1021/bi901085m.
OMP decarboxylase (ODCase) generates a very large rate enhancement without the assistance of metals or other cofactors. The uncatalyzed decarboxylation of 1-methylorotate in water is shown to involve the monoanion, although uncharged 1-methylorotic acid is decarboxylated at a similar rate. To measure the extent to which the rate of the nonenzymatic decarboxylation of orotate derivatives might be enhanced by their removal from solvent water, the 1-phosphoribosyl moiety of OMP was replaced with 1-substituents that would allow it to enter less polar solvents. When the tetrabutylammonium salt of 1-cyclohexylorotate was transferred from water to a series of dipolar aprotic solvents, its rate of decarboxylation increased markedly, varying with the relative ability of each solvent to release the substrate in the ground state from stabilization by solvent water acting as a proton donor. These findings are consistent with the view that separation of the substrate from solvent water may contribute, at least to a limited extent, to the rate enhancement produced by ODCase. This enzyme's active site, like that of another cofactorless enzyme recently shown to produce a rate enhancement similar in magnitude (uroporphyrinogen decarboxylase), is equipped with an ammonium group positioned in such a way as to balance the electrostatic charge of the carboxylate group of the substrate and later supply a proton to the incipient carbanion in a relatively waterless environment.
乳清酸脱羧酶(ODCase)在没有金属或其他辅助因子的情况下能极大地提高反应速率。研究表明,在水中1-甲基乳清酸的非催化脱羧反应涉及单阴离子,尽管不带电荷的1-甲基乳清酸以相似的速率脱羧。为了衡量从溶剂水中去除乳清酸衍生物对其非酶促脱羧反应速率的提高程度,将OMP的1-磷酸核糖部分替换为1-取代基,使其能够进入极性较小的溶剂。当1-环己基乳清酸的四丁铵盐从水转移到一系列偶极非质子溶剂中时,其脱羧速率显著增加,这取决于每种溶剂将底物从溶剂水作为质子供体的稳定作用中释放到基态的相对能力。这些发现与以下观点一致,即底物与溶剂水的分离可能至少在一定程度上有助于ODCase产生的速率提高。该酶的活性位点,与最近显示能产生类似程度速率提高的另一种无辅助因子的酶(尿卟啉原脱羧酶)的活性位点一样,配备有一个铵基团,其位置能够平衡底物羧酸盐基团的静电荷,并随后在相对无水的环境中向初生碳负离子提供一个质子。