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正反馈和负反馈环的组合赋予了生化开关极高的灵活性。

The combination of positive and negative feedback loops confers exquisite flexibility to biochemical switches.

机构信息

Department of Pure and Applied Sciences, University of Tokyo, Tokyo 153-8902, Japan. pfeuty

出版信息

Phys Biol. 2009 Nov 12;6(4):046013. doi: 10.1088/1478-3975/6/4/046013.

Abstract

A wide range of cellular processes require molecular regulatory pathways to convert a graded signal into a discrete response. One prevalent switching mechanism relies on the coexistence of two stable states (bistability) caused by positive feedback regulations. Intriguingly, positive feedback is often supplemented with negative feedback, raising the question of whether and how these two types of feedback can cooperate to control discrete cellular responses. To address this issue, we formulate a canonical model of a protein-protein interaction network and analyze the dynamics of a prototypical two-component circuit. The appropriate combination of negative and positive feedback loops can bring a bistable circuit close to the oscillatory regime. Notably, sharply activated negative feedback can give rise to a bistable regime wherein two stable fixed points coexist and may collide pairwise with two saddle points. This specific type of bistability is found to allow for separate and flexible control of switch-on and switch-off events, for example (i) to combine fast and reversible transitions, (ii) to enable transient switching responses and (iii) to display tunable noise-induced transition rates. Finally, we discuss the relevance of such bistable switching behavior, and the circuit topologies considered, to specific biological processes such as adaptive metabolic responses, stochastic fate decisions and cell-cycle transitions. Taken together, our results suggest an efficient mechanism by which positive and negative feedback loops cooperate to drive the flexible and multifaceted switching behaviors arising in biological systems.

摘要

一系列细胞过程需要分子调节途径将梯度信号转换为离散响应。一种流行的开关机制依赖于正反馈调节引起的两种稳定状态(双稳性)共存。有趣的是,正反馈通常与负反馈相结合,这就提出了一个问题,即这两种类型的反馈是否以及如何合作来控制离散的细胞反应。为了解决这个问题,我们制定了一个蛋白质-蛋白质相互作用网络的典型模型,并分析了一个原型双组分电路的动力学。适当组合负反馈和正反馈回路可以使双稳态电路接近振荡状态。值得注意的是,强烈激活的负反馈可以产生双稳态,其中两个稳定的平衡点共存,并且可能与两个鞍点成对碰撞。这种特定类型的双稳性被发现允许单独和灵活地控制开关-on 和开关-off 事件,例如 (i) 组合快速和可逆的跃迁,(ii) 实现瞬态开关响应,以及 (iii) 显示可调谐的噪声诱导跃迁率。最后,我们讨论了这种双稳开关行为的相关性,以及所考虑的电路拓扑结构,与自适应代谢反应、随机命运决策和细胞周期转换等特定生物过程的相关性。总之,我们的结果表明,正反馈和负反馈回路合作的一种有效机制可以驱动生物系统中出现的灵活和多方面的开关行为。

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