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结核分枝杆菌支链氨基酸转氨酶(IlvE)的1.9埃结构。

The 1.9 A structure of the branched-chain amino-acid transaminase (IlvE) from Mycobacterium tuberculosis.

作者信息

Tremblay L W, Blanchard J S

机构信息

Department of Biochemistry, Albert Einstein College of Medicine, Bronx, NY 10461, USA.

出版信息

Acta Crystallogr Sect F Struct Biol Cryst Commun. 2009 Nov 1;65(Pt 11):1071-7. doi: 10.1107/S1744309109036690. Epub 2009 Oct 13.

Abstract

Unlike mammals, bacteria encode enzymes that synthesize branched-chain amino acids. The pyridoxal 50-phosphate-dependent transaminase performs the final biosynthetic step in these pathways, converting keto acid precursors into -amino acids. The branched-chain amino-acid transaminase from Mycobacterium tuberculosis (MtIlvE) has been crystallized and its structure has been solved at 1.9 angstrom resolution. The MtIlvE monomer is composed of two domains that interact to form the active site. The biologically active form of IlvE is a homodimer in which each monomer contributes a substrate-specificity loop to the partner molecule. Additional substrate selectivity may be imparted by a conserved N-terminal Phe30 residue, which has previously been observed to shield the active site in the type IV fold homodimer. The active site of MtIlvE contains density corresponding to bound PMP, which is likely to be a consequence of the presence of tryptone in the crystallization medium. Additionally, two cysteine residues are positioned at the dimer interface for disulfide-bond formation under oxidative conditions. It is unknown whether they are involved in any regulatory activities analogous to those of the human mitochondrial branched-chain amino-acid transaminase.

摘要

与哺乳动物不同,细菌编码合成支链氨基酸的酶。磷酸吡哆醛依赖性转氨酶在这些途径中执行最后的生物合成步骤,将酮酸前体转化为α-氨基酸。结核分枝杆菌的支链氨基酸转氨酶(MtIlvE)已结晶,其结构已在1.9埃分辨率下解析。MtIlvE单体由两个相互作用形成活性位点的结构域组成。IlvE的生物活性形式是同源二聚体,其中每个单体为伙伴分子贡献一个底物特异性环。保守的N端Phe30残基可能赋予额外的底物选择性,此前已观察到该残基在IV型折叠同源二聚体中屏蔽活性位点。MtIlvE的活性位点含有与结合的磷酸吡哆醛(PMP)相对应的电子密度,这可能是结晶培养基中存在胰蛋白胨的结果。此外,两个半胱氨酸残基位于二聚体界面,以便在氧化条件下形成二硫键。它们是否参与类似于人类线粒体支链氨基酸转氨酶的任何调节活动尚不清楚。

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本文引用的文献

1
A heterospecific leucine zipper tetramer.
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2
MolProbity: all-atom contacts and structure validation for proteins and nucleic acids.
Nucleic Acids Res. 2007 Jul;35(Web Server issue):W375-83. doi: 10.1093/nar/gkm216. Epub 2007 Apr 22.
3
Human mitochondrial branched chain aminotransferase isozyme: structural role of the CXXC center in catalysis.
J Biol Chem. 2006 Dec 22;281(51):39660-71. doi: 10.1074/jbc.M607552200. Epub 2006 Oct 18.
5
Structural determinants for branched-chain aminotransferase isozyme-specific inhibition by the anticonvulsant drug gabapentin.
J Biol Chem. 2005 Nov 4;280(44):37246-56. doi: 10.1074/jbc.M506486200. Epub 2005 Sep 1.
7
Dual substrate recognition of aminotransferases.
Chem Rec. 2005;5(3):160-72. doi: 10.1002/tcr.20042.
8
Coot: model-building tools for molecular graphics.
Acta Crystallogr D Biol Crystallogr. 2004 Dec;60(Pt 12 Pt 1):2126-32. doi: 10.1107/S0907444904019158. Epub 2004 Nov 26.
10
Refinement of macromolecular structures by the maximum-likelihood method.
Acta Crystallogr D Biol Crystallogr. 1997 May 1;53(Pt 3):240-55. doi: 10.1107/S0907444996012255.

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