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全基因组关联研究正常眼压性青光眼:SRBD1 和 ELOVL5 中的常见变异与疾病易感性相关。

Genome-wide association study of normal tension glaucoma: common variants in SRBD1 and ELOVL5 contribute to disease susceptibility.

机构信息

Department of Ophthalmology and Visual Science, Yokohama City University Graduate School of Medicine, Yokohama, Kanagawa, Japan.

出版信息

Ophthalmology. 2010 Jul;117(7):1331-8.e5. doi: 10.1016/j.ophtha.2009.12.001. Epub 2010 Apr 3.

Abstract

PURPOSE

Factors contributing to the development of normal tension glaucoma (NTG), degenerative optic neuropathy characterized by the progressive loss of retinal ganglion cells, optic nerve axons, and visual fields, have not been determined. To identify genetic risk factors for NTG, we performed a genome-wide association study of NTG.

DESIGN

Case-control study.

PARTICIPANTS

The study cohort consisted of 305 Japanese patients with NTG and 355 controls.

METHODS

We genotyped 500,568 single-nucleotide polymorphisms (SNPs) and assessed the allelic diversity among cases and controls.

MAIN OUTCOME MEASURES

Genotypes of 500,568 SNPs.

RESULTS

The 2 most strongly NTG-associated SNPs, rs3213787 and rs735860, are located in an intron of SRBD1 and the 3'-untranslated region of ELOVL5 (P = 2.5 x 10(-9), odds ratio = 2.80 and P = 4.1 x 10(-6), odds ratio = 1.69), respectively. Real-time quantitative reverse transcription-polymerase chain reaction assays showed significantly increased expression of each gene in the white blood cells of subjects harboring the risk allele of these SNPs.

CONCLUSIONS

Our genome-wide association study identified SRBD1 and ELOVL5 as new susceptibility genes for NTG. Because SRBD1 and ELOVL5 are reportedly involved in the induction of cell growth inhibition or apoptosis, the regulation of SRBD1 and ELOVL5 cascades may play an important physiologic role in the risk of NTG development.

FINANCIAL DISCLOSURE(S): The author(s) have no proprietary or commercial interest in any materials discussed in this article.

摘要

目的

尚未确定导致正常眼压性青光眼(NTG)发展的因素。NTG 是一种退行性视神经病变,其特征是视网膜神经节细胞、视神经轴突和视野逐渐丧失。为了确定 NTG 的遗传风险因素,我们对 NTG 进行了全基因组关联研究。

设计

病例对照研究。

参与者

研究队列包括 305 名日本 NTG 患者和 355 名对照。

方法

我们对 500568 个单核苷酸多态性(SNP)进行了基因分型,并评估了病例和对照之间的等位基因多样性。

主要观察指标

500568 个 SNP 的基因型。

结果

与 NTG 关联最强的 2 个 SNP(rs3213787 和 rs735860)分别位于 SRBD1 的内含子和 ELOVL5 的 3'-非翻译区(P=2.5×10(-9),优势比=2.80 和 P=4.1×10(-6),优势比=1.69)。实时定量逆转录聚合酶链反应检测显示,携带这些 SNP 风险等位基因的受试者白细胞中每个基因的表达均显著增加。

结论

我们的全基因组关联研究确定了 SRBD1 和 ELOVL5 是 NTG 的新易感基因。由于 SRBD1 和 ELOVL5 据报道参与诱导细胞生长抑制或细胞凋亡,SRBD1 和 ELOVL5 级联的调节可能在 NTG 发展的风险中发挥重要的生理作用。

金融披露

作者没有在本文讨论的任何材料中拥有专有权或商业利益。

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