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生瘿树木的比较。

Comparison of galled trees.

机构信息

Department of Mathematics and Computer Science, University of the Balearic Islands, E-07122 Palma de Mallorca, Spain.

出版信息

IEEE/ACM Trans Comput Biol Bioinform. 2011 Mar-Apr;8(2):410-27. doi: 10.1109/TCBB.2010.60.

Abstract

Galled trees, directed acyclic graphs that model evolutionary histories with isolated hybridization events, have become very popular due to both their biological significance and the existence of polynomial-time algorithms for their reconstruction. In this paper, we establish to which extent several distance measures for the comparison of evolutionary networks are metrics for galled trees, and hence, when they can be safely used to evaluate galled tree reconstruction methods.

摘要

纠结树,即有向无环图,可用于构建带有孤立杂交事件的进化历史模型,由于其具有重要的生物学意义,并且存在用于重建的多项式时间算法,因此变得非常流行。在本文中,我们确定了几种用于比较进化网络的距离度量方法在多大程度上是纠结树的度量方法,因此,在评估纠结树重建方法时可以安全使用这些方法。

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