Suppr超能文献

从 Na+与激活蛋白 C 和因子 Xa 的快速动力学结合中观察到 E*-E 平衡。

Evidence of the E*-E equilibrium from rapid kinetics of Na+ binding to activated protein C and factor Xa.

机构信息

Department of Biochemistry and Molecular Biology, Saint Louis University School of Medicine, St. Louis, Missouri 63104, USA.

出版信息

J Phys Chem B. 2010 Dec 16;114(49):16125-30. doi: 10.1021/jp105502c. Epub 2010 Sep 2.

Abstract

Na(+) binding to thrombin enhances the procoagulant and prothrombotic functions of the enzyme and obeys a mechanism that produces two kinetic phases: one fast (in the microsecond time scale) due to Na(+) binding to the low activity form E to produce the high activity form E:Na(+) and another considerably slower (in the millisecond time scale) that reflects a pre-equilibrium between E and the inactive form E*. In this study, we demonstrate that this mechanism also exists in other Na(+)-activated clotting proteases like factor Xa and activated protein C. These findings, along with recent structural data, suggest that the E*-E equilibrium is a general feature of the trypsin fold.

摘要

钠离子与凝血酶结合增强了酶的促凝血和促血栓形成功能,并遵循一种产生两个动力学相的机制:一个快速(在微秒时间范围内),由于钠离子与低活性形式 E 结合产生高活性形式 E:Na(+);另一个相当慢(在毫秒时间范围内),反映了 E 与无活性形式 E之间的预平衡。在这项研究中,我们证明了这种机制也存在于其他钠离子激活的凝血蛋白酶中,如因子 Xa 和活化蛋白 C。这些发现,以及最近的结构数据,表明 E-E 平衡是胰蛋白酶折叠的一个普遍特征。

相似文献

1
Evidence of the E*-E equilibrium from rapid kinetics of Na+ binding to activated protein C and factor Xa.
J Phys Chem B. 2010 Dec 16;114(49):16125-30. doi: 10.1021/jp105502c. Epub 2010 Sep 2.
4
Thermodynamics of Na+ binding to coagulation serine proteases.
Biophys Chem. 2001 Mar 15;90(1):89-96. doi: 10.1016/s0301-4622(01)00129-6.
6
7
Rapid kinetics of Na+ binding to thrombin.
J Biol Chem. 2006 Dec 29;281(52):40049-56. doi: 10.1074/jbc.M608600200. Epub 2006 Oct 30.
10
Protein Z-dependent protease inhibitor (ZPI) is a physiologically significant inhibitor of prothrombinase function.
J Biol Chem. 2019 May 10;294(19):7644-7657. doi: 10.1074/jbc.RA118.006787. Epub 2019 Mar 27.

引用本文的文献

1
Cryo-EM structure of the prothrombin-prothrombinase complex.
Blood. 2022 Jun 16;139(24):3463-3473. doi: 10.1182/blood.2022015807.
2
Simulations suggest double sodium binding induces unexpected conformational changes in thrombin.
J Mol Model. 2022 Apr 13;28(5):120. doi: 10.1007/s00894-022-05076-0.
3
The active site region plays a critical role in Na binding to thrombin.
J Biol Chem. 2022 Jan;298(1):101458. doi: 10.1016/j.jbc.2021.101458. Epub 2021 Nov 30.
5
Mechanisms of ligand binding.
Biophys Rev (Melville). 2020 Dec;1(1):011303. doi: 10.1063/5.0020997.
6
F NMR reveals the conformational properties of free thrombin and its zymogen precursor prethrombin-2.
J Biol Chem. 2020 Jun 12;295(24):8227-8235. doi: 10.1074/jbc.RA120.013419. Epub 2020 May 1.
7
Residues W215, E217 and E192 control the allosteric E*-E equilibrium of thrombin.
Sci Rep. 2019 Aug 23;9(1):12304. doi: 10.1038/s41598-019-48839-1.
9
Interplay between conformational selection and zymogen activation.
Sci Rep. 2018 Mar 6;8(1):4080. doi: 10.1038/s41598-018-21728-9.
10
Molecular Mechanisms of Enzyme Activation by Monovalent Cations.
J Biol Chem. 2016 Sep 30;291(40):20840-20848. doi: 10.1074/jbc.R116.737833. Epub 2016 Jul 26.

本文引用的文献

1
NMR resonance assignments of thrombin reveal the conformational and dynamic effects of ligation.
Proc Natl Acad Sci U S A. 2010 Aug 10;107(32):14087-92. doi: 10.1073/pnas.1005255107. Epub 2010 Jul 21.
2
Ligand binding shuttles thrombin along a continuum of zymogen- and proteinase-like states.
J Biol Chem. 2010 Sep 10;285(37):28651-8. doi: 10.1074/jbc.M110.154914. Epub 2010 Jul 16.
3
A revisit to the one form kinetic model of prothrombinase.
Biophys Chem. 2010 Jun;149(1-2):28-33. doi: 10.1016/j.bpc.2010.03.011. Epub 2010 Mar 25.
4
Activation and inhibition of histone deacetylase 8 by monovalent cations.
J Biol Chem. 2010 Feb 26;285(9):6036-43. doi: 10.1074/jbc.M109.033399. Epub 2009 Dec 22.
5
Structural basis of the cofactor- and substrate-assisted activation of human coagulation factor IXa.
Structure. 2009 Dec 9;17(12):1669-1678. doi: 10.1016/j.str.2009.10.011.
6
Mutant N143P reveals how Na+ activates thrombin.
J Biol Chem. 2009 Dec 25;284(52):36175-36185. doi: 10.1074/jbc.M109.069500. Epub 2009 Oct 21.
7
Molecular basis of thrombomodulin activation of slow thrombin.
J Thromb Haemost. 2009 Oct;7(10):1688-95. doi: 10.1111/j.1538-7836.2009.03563.x. Epub 2009 Jul 28.
8
Slow thrombin is zymogen-like.
J Thromb Haemost. 2009 Jul;7 Suppl 1(S1STATE):159-64. doi: 10.1111/j.1538-7836.2009.03365.x.
9
Mechanism of the anticoagulant activity of thrombin mutant W215A/E217A.
J Biol Chem. 2009 Sep 4;284(36):24098-105. doi: 10.1074/jbc.M109.025403. Epub 2009 Jul 8.
10
Know your APC.
Blood. 2009 Jun 4;113(23):5699-700. doi: 10.1182/blood-2009-03-211292.

文献AI研究员

20分钟写一篇综述,助力文献阅读效率提升50倍。

立即体验

用中文搜PubMed

大模型驱动的PubMed中文搜索引擎

马上搜索

文档翻译

学术文献翻译模型,支持多种主流文档格式。

立即体验