Department of Biology, Massachusetts Institute of Technology, Cambridge, Massachusetts 02139, USA.
Protein Sci. 2011 Jan;20(1):30-41. doi: 10.1002/pro.531.
Chaperonins assist in the folding of nascent and misfolded proteins, though the mechanism of folding within the lumen of the chaperonin remains poorly understood. The archeal chaperonin from Methanococcus marapaludis, Mm-Cpn, shares the eightfold double barrel structure with other group II chaperonins, including the eukaryotic TRiC/CCT, required for actin and tubulin folding. However, Mm-Cpn is composed of a single species subunit, similar to group I chaperonin GroEL, rather than the eight subunit species needed for TRiC/CCT. Features of the β-sheet fold have been identified as sites of recognition by group II chaperonins. The crystallins, the major components of the vertebrate eye lens, are β-sheet proteins with two homologous Greek key domains. During refolding in vitro a partially folded intermediate is populated, and partitions between productive folding and off-pathway aggregation. We report here that in the presence of physiological concentrations of ATP, Mm-Cpn suppressed the aggregation of HγD-Crys by binding the partially folded intermediate. The complex was sufficiently stable to permit recovery by size exclusion chromatography. In the presence of ATP, Mm-Cpn promoted the refolding of the HγD-Crys intermediates to the native state. The ability of Mm-Cpn to bind and refold a human β-sheet protein suggests that Mm-Cpn may be useful as a simplified model for the substrate recognition mechanism of TRiC/CCT.
伴侣蛋白协助新生和错误折叠的蛋白质折叠,尽管伴侣蛋白腔内部的折叠机制仍未得到很好的理解。古菌 Methanococcus marapaludis 的伴侣蛋白 Mm-Cpn 与其他 II 类伴侣蛋白(包括折叠肌动蛋白和微管蛋白所需的真核 TRiC/CCT)共享八重双桶结构。然而,Mm-Cpn 由单一物种亚基组成,类似于 I 类伴侣蛋白 GroEL,而不是 TRiC/CCT 所需的八个亚基物种。β-折叠的特征已被确定为 II 类伴侣蛋白的识别位点。晶状体蛋白是脊椎动物眼睛晶状体的主要成分,是具有两个同源希腊钥匙结构域的β-折叠蛋白。在体外重折叠过程中,会出现部分折叠的中间体,并在有产物折叠和无产物折叠的聚集之间进行分区。我们在此报告,在生理浓度的 ATP 存在下,Mm-Cpn 通过结合部分折叠的中间体抑制 HγD-Crys 的聚集。该复合物足够稳定,可以通过大小排阻层析回收。在 ATP 存在下,Mm-Cpn 促进 HγD-Crys 中间体向天然状态的重折叠。Mm-Cpn 结合和重折叠人β-折叠蛋白的能力表明,Mm-Cpn 可用作 TRiC/CCT 底物识别机制的简化模型。