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对分类学上密集采样数据集的多基因分析揭示了蝗莺科鸟类中广泛的非单系性。

Multilocus analysis of a taxonomically densely sampled dataset reveal extensive non-monophyly in the avian family Locustellidae.

机构信息

Swedish Species Information Centre, Swedish University of Agricultural Sciences, Uppsala, Sweden.

出版信息

Mol Phylogenet Evol. 2011 Mar;58(3):513-26. doi: 10.1016/j.ympev.2010.12.012. Epub 2011 Jan 15.

Abstract

The phylogeny of most of the species in the avian passerine family Locustellidae is inferred using a Bayesian species tree approach (Bayesian Estimation of Species Trees, BEST), as well as a traditional Bayesian gene tree method (MrBayes), based on a dataset comprising one mitochondrial and four nuclear loci. The trees inferred by the different methods agree fairly well in topology, although in a few cases there are marked differences. Some of these discrepancies might be due to convergence problems for BEST (despite up to 1×10(9) iterations). The phylogeny strongly disagrees with the current taxonomy at the generic level, and we propose a revised classification that recognizes four instead of seven genera. These results emphasize the well known but still often neglected problem of basing classifications on non-cladistic evaluations of morphological characters. An analysis of an extended mitochondrial dataset with multiple individuals from most species, including many subspecies, suggest that several taxa presently treated as subspecies or as monotypic species as well as a few taxa recognized as separate species are in need of further taxonomic work.

摘要

使用贝叶斯种树方法(贝叶斯物种树估计,BEST)和传统的贝叶斯基因树方法(MrBayes),基于包含一个线粒体和四个核基因座的数据集,推断出雀形目蝗莺科大多数物种的系统发育关系。不同方法推断出的树在拓扑结构上相当吻合,尽管在某些情况下存在明显差异。这些差异中的一些可能是由于 BEST 存在收敛问题(尽管迭代次数高达 1×10(9))。该系统发育与当前的属级分类法强烈不一致,我们提出了一个修订的分类方案,承认四个属而不是七个属。这些结果强调了一个众所周知但仍然经常被忽视的问题,即基于对形态特征的非分支评估来进行分类。对包含大多数物种(包括许多亚种)的多个个体的扩展线粒体数据集的分析表明,目前被视为亚种或单种物种的几个分类单元以及一些被视为独立物种的分类单元需要进一步的分类工作。

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