Division of Environmental and Biomolecular Systems, Oregon Health and Science University, Beaverton, Oregon 97006, United States.
Biochemistry. 2011 Jul 5;50(26):5939-47. doi: 10.1021/bi200409a. Epub 2011 Jun 14.
Denitrifying NO reductases are evolutionarily related to the superfamily of heme--copper terminal oxidases. These transmembrane protein complexes utilize a heme-nonheme diiron center to reduce two NO molecules to N(2)O. To understand this reaction, the diiron site has been modeled using sperm whale myoglobin as a scaffold and mutating distal residues Leu-29 and Phe-43 to histidines and Val-68 to a glutamic acid to create a nonheme Fe(B) site. The impact of incorporation of metal ions at this engineered site on the reaction of the ferrous heme with one NO was examined by UV-vis absorption, EPR, resonance Raman, and FTIR spectroscopies. UV--vis absorption and resonance Raman spectra demonstrate that the first NO molecule binds to the ferrous heme, but while the apoproteins and Cu(I)- or Zn(II)-loaded proteins show characteristic EPR signatures of S = 1/2 six-coordinate heme {FeNO}(7) species that can be observed at liquid nitrogen temperature, the Fe(II)-loaded proteins are EPR silent at ≥30 K. Vibrational modes from the heme [Fe-N-O] unit are identified in the RR and FTIR spectra using (15)NO and (15)N(18)O. The apo and Cu(I)-bound proteins exhibit ν(FeNO) and ν(NO) that are only marginally distinct from those reported for native myoglobin. However, binding of Fe(II) at the Fe(B) site shifts the heme ν(FeNO) by 17 cm(-1) and the ν(NO) by -50 cm(-1) to 1549 cm(-1). This low ν(NO) is without precedent for a six-coordinate heme {FeNO}(7) species and suggests that the NO group adopts a strong nitroxyl character stabilized by electrostatic interaction with the nearby nonheme Fe(II). Detection of a similarly low ν(NO) in the Zn(II)-loaded protein supports this interpretation.
反硝化硝酸盐还原酶在进化上与血红素-铜末端氧化酶超家族有关。这些跨膜蛋白复合物利用血红素-非血红素双核铁中心将两个 NO 分子还原为 N(2)O。为了理解这个反应,使用抹香鲸肌红蛋白作为支架模拟双核铁位点,并将远端残基 Leu-29 和 Phe-43 突变为组氨酸和 Val-68 为谷氨酸,以创建非血红素 Fe(B)位点。通过紫外-可见吸收、EPR、共振拉曼和 FTIR 光谱研究了在该工程位点掺入金属离子对亚铁血红素与一个 NO 反应的影响。紫外-可见吸收和共振拉曼光谱表明,第一个 NO 分子与亚铁血红素结合,但在脱蛋白和 Cu(I)-或 Zn(II)-负载的蛋白质中,观察到特征性的 EPR 信号 S = 1/2 六配位血红素 {FeNO}(7)物种,可以在液氮温度下观察到,而 Fe(II)-负载的蛋白质在≥30 K 时 EPR 沉默。在 RR 和 FTIR 光谱中使用 (15)NO 和 (15)N(18)O 鉴定来自血红素的 [Fe-N-O]单元的振动模式。脱蛋白和 Cu(I)-结合的蛋白质表现出 ν(FeNO)和 ν(NO),它们仅与天然肌红蛋白报道的那些略有不同。然而,Fe(B)位点上 Fe(II)的结合将血红素 ν(FeNO)移动 17 cm(-1),ν(NO)移动-50 cm(-1)至 1549 cm(-1)。这种低 ν(NO)在六配位血红素 {FeNO}(7)物种中是前所未有的,表明 NO 基团采用强硝酰基特征,由与附近非血红素 Fe(II)的静电相互作用稳定。在 Zn(II)-负载的蛋白质中检测到类似的低 ν(NO)支持这种解释。