Suppr超能文献

优化过渡界面采样模拟。

Optimizing transition interface sampling simulations.

机构信息

Faculty of Physics, University of Vienna, Vienna, Austria.

出版信息

J Chem Phys. 2011 Jun 28;134(24):244118. doi: 10.1063/1.3601919.

Abstract

We demonstrate that a recently proposed adaptive optimization algorithm for forward flux sampling simulations [E. E. Borrero and F. A. Escobedo, J. Chem. Phys. 129, 024115 (2008)] can be easily applied within the framework of transition interface sampling. This optimization algorithm systematically identifies the kinetic bottlenecks along the order parameter used to partition phase space via interfaces and improves the statistical accuracy of the reaction rate constant estimate. In different versions of the algorithm, the number or the placement of the interfaces (or both) are varied in order to allocate the numerical effort in a balanced way. The algorithm is demonstrated for a simple two-dimensional model and for the dipole flip transition of icelike structures inside carbon nanotubes. For these test systems, the optimization yielded an efficiency increase by a factor of 2-15.

摘要

我们证明了最近提出的一种用于正向通量采样模拟的自适应优化算法[E. E. Borrero 和 F. A. Escobedo,J. Chem. Phys. 129, 024115 (2008)]可以很容易地应用于跃迁界面采样的框架内。该优化算法系统地识别了通过界面用于划分相空间的序参量的动力学瓶颈,并提高了反应速率常数估计的统计精度。在算法的不同版本中,界面的数量或位置(或两者)会发生变化,以便以平衡的方式分配数值努力。该算法已在一个简单的二维模型和碳纳米管内冰状结构的偶极翻转跃迁中进行了验证。对于这些测试系统,优化使效率提高了 2-15 倍。

文献AI研究员

20分钟写一篇综述,助力文献阅读效率提升50倍。

立即体验

用中文搜PubMed

大模型驱动的PubMed中文搜索引擎

马上搜索

文档翻译

学术文献翻译模型,支持多种主流文档格式。

立即体验