Laine Maarit, Aromaa Maria, Virta Pasi, Lönnberg Tuomas, Poijärvi-Virta Päivi, Lönnberg Harri
Department of Chemistry, University of Turku, Turku, Finland.
Nucleosides Nucleotides Nucleic Acids. 2011 Jul-Aug;30(7-8):609-18. doi: 10.1080/15257770.2011.583809.
{2-Deoxy-3-O-[2-cyanoethoxy(diisopropylamino)phosphino]-5-O-(4,4'-dimethoxytrityl)-α-D- erythro-pentofuranosyl}-N-{2-[4,7,10-tris(2,2,2-trifluoroacetyl)-1,4,7,10-tetraazacyclododecan-1- yl]ethyl}acetamide (1) was prepared and incorporated into a 2'-O-methyl oligoribonucleotide. The hybridization of this oligonucleotide with complementary 2'-O-methyl oligoribonucleotides incorporating one to five uracil bases opposite to the azacrown structure was studied in the absence and presence of Zn(2+). Introduction of Zn(2+) moderately stabilized the duplex with U-bulged targets.