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哺乳动物β-珠蛋白启动子中的保守调控元件。

A conserved regulatory element in the mammalian β-globin promoters.

机构信息

Biomedical Research Institute, National Institute of Advanced Industrial Science and Technology, 1-1-1 Higashi, Tsukuba, Ibaraki, Japan.

出版信息

J Mol Evol. 2011 Oct;73(3-4):101-8. doi: 10.1007/s00239-011-9459-y. Epub 2011 Sep 24.

Abstract

We provide here evidence for a conserved regulatory element for transcription of the β-family globin genes based on a comparative study of 32 genes from 16 mammals. The element is characterized by the appearance of AA or TT dinucleotides in the A + T-rich region located 200-400 bp upstream of the cap sites. G-tracts 3-5 nucleotides long exist between the A + T-rich region and the conserved transcription factor binding sites (GATA-1 site and the CACCC, CCAAT, and ATA boxes) apparently dividing the regions. The average periodicity of AA or TT dinucleotides in the region from a total of 18 β-family globin genes from four species was approximately 10 bp, suggesting that the DNA in these regions shows right-handed superhelicity. The proposed biological function of this element is to adjust the spatial positions for the first interaction of the transcription factor(s) which can recognize specific DNA sequences in the presence of packed chromatin.

摘要

我们提供了一个基于 16 种哺乳动物的 32 个基因的比较研究,为β-珠蛋白基因转录的保守调控元件提供了证据。该元件的特征是在帽位点上游 200-400bp 的 A+T 丰富区出现 AA 或 TT 二核苷酸。在 A+T 丰富区和保守转录因子结合位点(GATA-1 位点和 CACCC、CCAAT 和 ATA 盒)之间存在 3-5 个核苷酸长的 G 链,显然将这些区域分隔开来。来自四个物种的总共 18 个β-珠蛋白基因的该区域中 AA 或 TT 二核苷酸的平均周期性约为 10bp,表明这些区域的 DNA 显示右手超螺旋。该元件的拟议生物学功能是调节转录因子(s)的第一个相互作用的空间位置,这些转录因子在包装的染色质存在下可以识别特定的 DNA 序列。

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