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InterPro 在 2011 年:家族和域预测数据库的新发展。

InterPro in 2011: new developments in the family and domain prediction database.

机构信息

EMBL Outstation European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, CB10 1SD Cambridge, UK.

出版信息

Nucleic Acids Res. 2012 Jan;40(Database issue):D306-12. doi: 10.1093/nar/gkr948. Epub 2011 Nov 16.

Abstract

InterPro (http://www.ebi.ac.uk/interpro/) is a database that integrates diverse information about protein families, domains and functional sites, and makes it freely available to the public via Web-based interfaces and services. Central to the database are diagnostic models, known as signatures, against which protein sequences can be searched to determine their potential function. InterPro has utility in the large-scale analysis of whole genomes and meta-genomes, as well as in characterizing individual protein sequences. Herein we give an overview of new developments in the database and its associated software since 2009, including updates to database content, curation processes and Web and programmatic interfaces.

摘要

InterPro(http://www.ebi.ac.uk/interpro/)是一个数据库,集成了关于蛋白质家族、结构域和功能位点的各种信息,并通过基于 Web 的接口和服务免费提供给公众。该数据库的核心是诊断模型,称为签名,可用于搜索蛋白质序列以确定其潜在功能。InterPro 在大规模分析整个基因组和元基因组以及描述单个蛋白质序列方面具有实用价值。本文概述了自 2009 年以来数据库及其相关软件的新进展,包括数据库内容、管理流程以及 Web 和编程接口的更新。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d125/3245097/2a347b28fd5a/gkr948f1.jpg

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