Department of Chemistry, Ecole Normale Supérieure, UMR ENS-CNRS-UPMC 8640, 24 rue Lhomond, 75005 Paris, France.
J Am Chem Soc. 2012 Mar 7;134(9):4116-9. doi: 10.1021/ja3007897. Epub 2012 Feb 22.
Hydration shell dynamics plays a critical role in protein folding and biochemical activity and has thus been actively studied through a broad range of techniques. While all observations concur with a slowdown of water dynamics relative to the bulk, the magnitude and molecular origin of this retardation remain unclear. Via numerical simulations and theoretical modeling, we establish a molecular description of protein hydration dynamics and identify the key protein features that govern it. Through detailed microscopic mapping of the water reorientation and hydrogen-bond (HB) dynamics around lysozyme, we first determine that 80% of the hydration layer waters experience a moderate slowdown factor of ~2-3, while the slower residual population is distributed along a power-law tail, in quantitative agreement with recent NMR results. We then establish that the water reorientation mechanism at the protein interface is dominated by large angular jumps similar to the bulk situation. A theoretical extended jump model is shown to provide the first rigorous determination of the two key contributions to the observed slowdown: a topological excluded-volume factor resulting from the local protein geometry, which governs the dynamics of the fastest 80% of the waters, and a free energetic factor arising from the water-protein HB strength, which is especially important for the remaining waters in confined sites at the protein interface. These simple local factors are shown to provide a nearly quantitative description of the hydration shell dynamics.
水合壳动力学在蛋白质折叠和生物化学活性中起着关键作用,因此通过广泛的技术得到了积极的研究。虽然所有的观察结果都表明水的动力学相对于体相变慢,但这种延迟的幅度和分子起源仍然不清楚。通过数值模拟和理论建模,我们建立了蛋白质水合动力学的分子描述,并确定了控制它的关键蛋白质特征。通过对溶菌酶周围水的重新取向和氢键(HB)动力学的详细微观映射,我们首先确定 80%的水合层水经历了适度的慢化因子~2-3,而较慢的剩余部分沿幂律尾部分布,与最近的 NMR 结果定量一致。然后我们确定蛋白质界面上水的重新取向机制主要由类似于体相的大角度跳跃主导。扩展跳跃模型表明,该模型提供了对观察到的减速的两个关键贡献的第一个严格确定:一个拓扑排除体积因子,它由局部蛋白质几何形状决定,控制着最快的 80%的水的动力学;另一个自由能因子,它来自水-蛋白质 HB 强度,对于蛋白质界面上受限位置的剩余水特别重要。这些简单的局部因子几乎可以定量描述水合壳动力学。