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基质辅助激光解吸电离飞行时间质谱法鉴定动物巴斯德氏菌科。

Identification of animal Pasteurellaceae by MALDI-TOF mass spectrometry.

机构信息

Institute of Veterinary Bacteriology, Vetsuisse Faculty, University of Bern, Bern, Switzerland.

出版信息

J Microbiol Methods. 2012 Apr;89(1):1-7. doi: 10.1016/j.mimet.2012.02.001. Epub 2012 Feb 10.

Abstract

Species of the family Pasteurellaceae play an important role as primary or opportunistic animal pathogens. In veterinary diagnostic laboratories identification of this group of bacteria is mainly done by phenotypic assays while genetic identification based on housekeeping genes is mostly used for research and particularly important diagnostic samples. MALDI-TOF MS seems to represent a promising alternative to the currently practiced cumbersome, phenotypic diagnostics carried out in many veterinary diagnostic laboratories. We therefore assessed its application for animal associated members of the family Pasteurellaceae. The Bruker Biotyper 3.0 database was complemented with reference spectra of clinically relevant as well as commensal animal Pasteurellaceae species using generally five strains per species or subspecies and tested for its diagnostic potential with additional, well characterized field isolates. About 250 strains comprising 15 genera and more than 40 species and subspecies were included in the study, covering most representatives of the family. A high discrimination at the genus and species level was observed. Problematic discrimination was only observed with some closely related species and subspecies. MALDI-TOF MS was shown to represent a highly potent method for the diagnosis of this group of animal pathogens, combining speed, precision and low running costs.

摘要

巴斯德氏菌科的物种在作为原发性或机会性动物病原体方面起着重要作用。在兽医诊断实验室中,该组细菌的鉴定主要通过表型分析进行,而基于管家基因的遗传鉴定主要用于研究和特别重要的诊断样本。MALDI-TOF MS 似乎代表了对目前许多兽医诊断实验室中进行的繁琐、表型诊断的有前途的替代方法。因此,我们评估了其在与动物相关的巴斯德氏菌科成员中的应用。Bruker Biotyper 3.0 数据库使用通常每个物种或亚种五个菌株的临床相关和共生动物巴斯德氏菌科物种的参考光谱进行了补充,并使用其他经过良好表征的现场分离物对其诊断潜力进行了测试。该研究包括约 250 株菌株,涵盖了该科的大多数代表,包括 15 个属和 40 多种物种和亚种。在属和种水平上观察到了高度的区分能力。只有一些密切相关的物种和亚种才观察到有问题的区分。MALDI-TOF MS 被证明是一种非常有效的方法,用于诊断这群动物病原体,结合了速度、精度和低运行成本。

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