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曼杜里拉木霉完整线粒体基因组的系统发育分析证实了其在 Sordariales 目内的分类地位。

Phylogenetic analysis of the complete mitochondrial genome of Madurella mycetomatis confirms its taxonomic position within the order Sordariales.

机构信息

Department of Medical Microbiology and Infectious Diseases, Erasmus MC, Rotterdam, The Netherlands.

出版信息

PLoS One. 2012;7(6):e38654. doi: 10.1371/journal.pone.0038654. Epub 2012 Jun 6.

Abstract

BACKGROUND

Madurella mycetomatis is the most common cause of human eumycetoma. The genus Madurella has been characterized by overall sterility on mycological media. Due to this sterility and the absence of other reliable morphological and ultrastructural characters, the taxonomic classification of Madurella has long been a challenge. Mitochondria are of monophyletic origin and mitochondrial genomes have been proven to be useful in phylogenetic analyses.

RESULTS

The first complete mitochondrial DNA genome of a mycetoma-causative agent was sequenced using 454 sequencing. The mitochondrial genome of M. mycetomatis is a circular DNA molecule with a size of 45,590 bp, encoding for the small and the large subunit rRNAs, 27 tRNAs, 11 genes encoding subunits of respiratory chain complexes, 2 ATP synthase subunits, 5 hypothetical proteins, 6 intronic proteins including the ribosomal protein rps3. In phylogenetic analyses using amino acid sequences of the proteins involved in respiratory chain complexes and the 2 ATP synthases it appeared that M. mycetomatis clustered together with members of the order Sordariales and that it was most closely related to Chaetomium thermophilum. Analyses of the gene order showed that within the order Sordariales a similar gene order is found. Furthermore also the tRNA order seemed mostly conserved.

CONCLUSION

Phylogenetic analyses of fungal mitochondrial genomes confirmed that M. mycetomatis belongs to the order of Sordariales and that it was most closely related to Chaetomium thermophilum, with which it also shared a comparable gene and tRNA order.

摘要

背景

米卡多毛孢菌是人类真菌性足菌肿最常见的病原体。米卡多毛孢属在真菌培养基上整体表现为不育。由于这种不育性以及缺乏其他可靠的形态学和超微结构特征,米卡多毛孢属的分类学长期以来一直是一个挑战。线粒体具有单系起源,并且已证明线粒体基因组在系统发育分析中非常有用。

结果

首次使用 454 测序技术对一种真菌性足菌肿病原体的完整线粒体 DNA 基因组进行了测序。米卡多毛孢菌的线粒体基因组是一个大小为 45,590bp 的圆形 DNA 分子,编码小亚基和大亚基 rRNA、27 个 tRNA、11 个编码呼吸链复合物亚基的基因、2 个 ATP 合酶亚基、5 个假定蛋白、6 个内含子蛋白,包括核糖体蛋白 rps3。使用参与呼吸链复合物和 2 个 ATP 合酶的蛋白质的氨基酸序列进行系统发育分析表明,米卡多毛孢菌与 Sordariales 目成员聚在一起,与嗜热毛壳菌关系最为密切。基因顺序分析表明,在 Sordariales 目中发现了相似的基因顺序。此外,tRNA 顺序似乎也大多保守。

结论

真菌线粒体基因组的系统发育分析证实,米卡多毛孢菌属于 Sordariales 目,与嗜热毛壳菌关系最为密切,与嗜热毛壳菌具有相似的基因和 tRNA 顺序。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1042/3368884/06f66a91a62f/pone.0038654.g001.jpg

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