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潮间带贻贝(Perna perna)十个高度多态性微卫星位点的特征分析及其在该属内的跨物种扩增

Characterization of ten highly polymorphic microsatellite loci for the intertidal mussel Perna perna, and cross species amplification within the genus.

作者信息

Coelho Nelson C, Zardi Gerardo I, Pearson Gareth A, Serrão Ester A, Nicastro Katy R

机构信息

CCMAR, CIMAR-Laboratório Associado, University of Algarve, Campus de Gambelas, Faro 8005-139, Portugal.

出版信息

BMC Res Notes. 2012 Oct 8;5:558. doi: 10.1186/1756-0500-5-558.

Abstract

BACKGROUND

The brown mussel Perna perna (Linnaeus, 1758) is a dominant constituent of intertidal communities and a strong invader with multiple non-native populations distributed around the world. In a previous study, two polymorphic microsatellite loci were developed and used to determine population-level genetic diversity in invasive and native P. perna populations. However, higher number of microsatellite markers are required for reliable population genetic studies.In this context, in order to understand P. perna origins and history of invasion and to compare population genetic structure in native versus invaded areas, we developed 10 polymorphic microsatellite markers.

FINDINGS

Described microsatellite markers were developed from an enriched genomic library. Analyses and characterization of loci using 20 individuals from a population in Western Sahara revealed on average 11 alleles per locus (range: 5-27) and mean gene diversity of 0.75 (range: 0.31 - 0.95). One primer pair revealed possible linkage disequilibrium while heterozygote deficiency was significant at four loci. Six of these markers cross-amplified in P. canaliculus (origin: New Zealand).

CONCLUSIONS

Developed markers will be useful in addressing a variety of questions concerning P. perna, including dispersal scales, genetic variation and population structure, in both native and invaded areas.

摘要

背景

褐贻贝(Perna perna,林奈,1758年)是潮间带群落的主要组成部分,也是一种强大的入侵物种,在世界各地分布着多个非本地种群。在之前的一项研究中,开发了两个多态微卫星位点,并用于确定入侵和本地褐贻贝种群的群体水平遗传多样性。然而,可靠的群体遗传学研究需要更多数量的微卫星标记。在此背景下,为了了解褐贻贝的起源和入侵历史,并比较本地与入侵地区的群体遗传结构,我们开发了10个多态微卫星标记。

研究结果

所描述的微卫星标记是从一个富集基因组文库中开发出来的。使用来自西撒哈拉一个种群的20个个体对位点进行分析和表征,结果显示每个位点平均有11个等位基因(范围:5 - 27),平均基因多样性为0.75(范围:0.31 - 0.95)。一对引物显示可能存在连锁不平衡,而在四个位点杂合子不足显著。其中六个标记在新西兰原产的P. canaliculus中交叉扩增。

结论

开发的标记将有助于解决有关褐贻贝的各种问题,包括本地和入侵地区的扩散规模、遗传变异和群体结构。

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