Department of Physics and Astronomy, Vanderbilt University, Nashville, TN, USA.
Biophys J. 2012 Oct 3;103(7):1525-36. doi: 10.1016/j.bpj.2012.07.053. Epub 2012 Oct 2.
Bacteriophage T4 Lysozyme (T4L) catalyzes the hydrolysis of the peptidoglycan layer of the bacterial cell wall late in the infection cycle. It has long been postulated that equilibrium dynamics enable substrate access to the active site located at the interface between the N- and C-terminal domains. Crystal structures of WT-T4L and point mutants captured a range of conformations that differ by the hinge-bending angle between the two domains. Evidence of equilibrium between open and closed conformations in solution was gleaned from distance measurements between the two domains but the nature of the equilibrium and the timescale of the underlying motion have not been investigated. Here, we used fluorescence fluctuation spectroscopy to directly detect T4L equilibrium conformational fluctuations in solution. For this purpose, Tetramethylrhodamine probes were introduced at pairs of cysteines in regions of the molecule that undergo relative displacement upon transition from open to closed conformations. Correlation analysis of Tetramethylrhodamine intensity fluctuations reveals hinge-bending motion that changes the relative distance and orientation of the N- and C-terminal domains with ≅ 15 μs relaxation time. That this motion involves interconversion between open and closed conformations was further confirmed by the dampening of its amplitude upon covalent substrate trapping. In contrast to the prevalent two-state model of T4L equilibrium, molecular brightness and number of particles obtained from cumulant analysis suggest that T4L populates multiple intermediate states, consistent with the wide range of hinge-bending angles trapped in the crystal structure of T4L mutants.
噬菌体 T4 溶菌酶(T4L)在感染周期后期催化细菌细胞壁肽聚糖层的水解。长期以来,人们一直假设平衡动力学使底物能够进入位于 N 端和 C 端结构域之间界面的活性位点。WT-T4L 和点突变体的晶体结构捕获了一系列构象,这些构象在两个结构域之间的铰链弯曲角度上有所不同。溶液中开放和闭合构象之间平衡的证据是从两个结构域之间的距离测量中获得的,但平衡的性质和潜在运动的时间尺度尚未得到研究。在这里,我们使用荧光波动光谱法直接检测溶液中 T4L 平衡构象波动。为此,在分子中经历从开放构象到闭合构象转变时发生相对位移的区域中的一对半胱氨酸处引入了四甲基罗丹明探针。四甲基罗丹明强度波动的相关分析揭示了铰链弯曲运动,该运动改变了 N 端和 C 端结构域的相对距离和方向,弛豫时间约为 15 μs。该运动涉及开放和闭合构象之间的转换,这进一步通过共价底物捕获时其幅度的衰减得到证实。与 T4L 平衡的流行两态模型相反,从累积分析获得的分子亮度和粒子数表明 T4L 存在多个中间状态,这与 T4L 突变体晶体结构中捕获的广泛铰链弯曲角度一致。